Evidence map›Paper›PMID 37976184›Full record

ArticleJournal of experimental botany2024

Dynamics of hemoglobins during nodule development, nitrate response, and dark stress in Lotus japonicus.

Samuel Minguillón, Ángela Román, Carmen Pérez-Rontomé, Longlong Wang, Ping Xu, Jeremy D Murray, Deqiang Duanmu, Maria C Rubio, Manuel Becana

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Samuel MinguillónDepartamento de Biología Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (CSIC), Avenida Montañana 1005, Zaragoza, and Unidad Asociada GBsC (BIFI-Unizar) al CSIC, Zaragoza, Spain.ORCID 0000-0002-9629-9080
Ángela RománDepartamento de Biología Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (CSIC), Avenida Montañana 1005, Zaragoza, and Unidad Asociada GBsC (BIFI-Unizar) al CSIC, Zaragoza, Spain.ORCID 0000-0003-3457-999X
Carmen Pérez-RontoméDepartamento de Biología Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (CSIC), Avenida Montañana 1005, Zaragoza, and Unidad Asociada GBsC (BIFI-Unizar) al CSIC, Zaragoza, Spain.ORCID 0000-0002-9772-3170
Longlong WangNational Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0003-0537-2711
Ping XuCAS-JIC Centre of Excellence for Plant and Microbial Science, Centre for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0001-9031-9004
Jeremy D MurrayCAS-JIC Centre of Excellence for Plant and Microbial Science, Centre for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0003-3000-9199
Deqiang DuanmuNational Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-9365-362X
Maria C RubioDepartamento de Biología Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (CSIC), Avenida Montañana 1005, Zaragoza, and Unidad Asociada GBsC (BIFI-Unizar) al CSIC, Zaragoza, Spain.ORCID 0000-0002-9378-7775
Manuel BecanaDepartamento de Biología Vegetal, Estación Experimental de Aula Dei, Consejo Superior de Investigaciones Científicas (CSIC), Avenida Montañana 1005, Zaragoza, and Unidad Asociada GBsC (BIFI-Unizar) al CSIC, Zaragoza, Spain.ORCID 0000-0002-1083-0804
Consejo Superior de Investigaciones Científicas · ESChinese Academy of Sciences · CNHuazhong Agricultural University · CN

Funding

Agencia Estatal de Investigación PID2020-113985GB-I00/AEI/10.13039/501100011033Unit of Information Resources for Research
6 · The paper itself

Abstract

Legume nodules express multiple leghemoglobins (Lbs) and non-symbiotic hemoglobins (Glbs), but how they are regulated is unclear. Here, we study the regulation of all Lbs and Glbs of Lotus japonicus in different physiologically relevant conditions and mutant backgrounds. We quantified hemoglobin expression, localized reactive oxygen species (ROS) and nitric oxide (NO) in nodules, and deployed mutants deficient in Lbs and in the transcription factors NLP4 (associated with nitrate sensitivity) and NAC094 (associated with senescence). Expression of Lbs and class 2 Glbs was suppressed by nitrate, whereas expression of class 1 and 3 Glbs was positively correlated with external nitrate concentrations. Nitrate-responsive elements were found in the promoters of several hemoglobin genes. Mutant nodules without Lbs showed accumulation of ROS and NO and alterations of antioxidants and senescence markers. NO accumulation occurred by a nitrate-independent pathway, probably due to the virtual disappearance of Glb1-1 and the deficiency of Lbs. We conclude that hemoglobins are regulated in a gene-specific manner during nodule development and in response to nitrate and dark stress. Mutant analyses reveal that nodules lacking Lbs experience nitro-oxidative stress and that there is compensation of expression between Lb1 and Lb2. They also show modulation of hemoglobin expression by NLP4 and NAC094.

Indexed as

LotusNitratesGene Expression Regulation, PlantHemoglobinsLeghemoglobinNitric OxidePlant ProteinsReactive Oxygen SpeciesRoot Nodules, PlantSymbiosisHemoglobinsLeghemoglobinNitratesNitric OxidePlant ProteinsReactive Oxygen SpeciesGene regulationknockout mutantslegume nodule senescenceLotus japonicusplant hemoglobinssymbiosis

Identifiers

PMID37976184
PMCPMC10901204
OpenAlexW4388758265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.