Evidence map›Paper›PMID 37975802›Full record

ArticleJournal of computational biology : a journal of computational molecular cell biology2024

Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme.

Minh Hoang, Guillaume Marçais, Carl Kingsford

Abstract read
In one paragraph

Article in Journal of computational biology : a journal of computational molecular cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. k-nonical space: sketching with reverse complements.Bioinformatics (Oxford, England) · 2024
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Minh HoangDepartment of Computer Science, and Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-1053-6744
Guillaume MarçaisDepartment of Computational Biology, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
Carl KingsfordDepartment of Computational Biology, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

Funding

Improved genomic sketching for MUMmer and metagenomicsR01HG012470 · NHGRI · CARNEGIE-MELLON UNIVERSITY · PI KINGSFORD, CARLETON LEE, MARÇAIS, GUILLAUME · 2022 to 2025
$1.7M
NHGRI NIH HHS R01 HG012470
6 · The paper itself

Abstract

Minimizers and syncmers are sketching methods that sample representative

Indexed as

AlgorithmsGenomicsGenome, HumanHumansdeep learningoptimizationsequence sketching

Identifiers

PMID37975802
PMCPMC10794853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.