Evidence map›Paper›PMID 37973966›Full record

ArticleScientific data2023

Transcriptome profiles of Streptomyces clavuligerus strains producing different titers of clavulanic acid.

Junpyo Gong, Jeong Sang Yi, Hang Su Cho, Chang Hun Shin, Hyung-Jin Won, Byung-Kwan Cho, Minsoo Noh, Yeo Joon Yoon

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Junpyo GongNatural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0009-0008-9432-444X
Jeong Sang YiNatural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0000-0002-1465-975X
Hang Su ChoNatural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.
Chang Hun ShinResearch Institute of CKD BiO, Ansan, 15604, Republic of Korea.
Hyung-Jin WonResearch Institute of CKD BiO, Ansan, 15604, Republic of Korea.
Byung-Kwan ChoDepartment of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.ORCID 0000-0003-4788-4184
Minsoo NohNatural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea. minsoonoh@snu.ac.kr.
Yeo Joon YoonNatural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea. yeojoonyoon@snu.ac.kr.ORCID 0000-0002-3637-3103

Funding

Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (iPET) 321110-4Ministry of Education (Ministry of Education of the Republic of Korea) 2022R1I1A1A01068507National Research Foundation of Korea (NRF) 2019R1A2C2085749National Research Foundation of Korea (NRF) 2022R1A2C300462
6 · The paper itself

Abstract

Streptomyces clavuligerus NRRL 3585 is a native producer of clavulanic acid (CA), a clinically used β-lactamase inhibitor, and is widely used as an industrial strain for the production of antibiotics. Selective random mutagenesis has successfully generated the improved CA-producing S. clavuligerus mutant strains as well as the strain with the loss of CA biosynthesis. To understand the molecular mechanisms associated with the improved CA-production potential, genome-scale RNA-sequencing-based transcriptional data were obtained for the wild-type S. clavuligerus strain and its three mutant strains. Total RNA samples for each strain were collected across four different growth stages, and all 32 sequencing data points exhibited an average Phred score of 36. The high-quality genome-scale transcriptional profile of S. clavuligerus strains with varied CA biosynthetic potential provides valuable insights and new opportunities for discovering efficient metabolic engineering strategies for the development of improved industrial strains.

Indexed as

Anti-Bacterial AgentsTranscriptomeClavulanic AcidRNAStreptomycesAnti-Bacterial AgentsClavulanic AcidRNA

Identifiers

PMID37973966
PMCPMC10654394

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.