Evidence map›Paper›PMID 37973947›Full record

ArticleNature medicine2023

Clonal selection of hematopoietic stem cells after gene therapy for sickle cell disease.

Michael Spencer Chapman, Alyssa H Cull, Marioara F Ciuculescu, Erica B Esrick, Emily Mitchell, Hyunchul Jung, Laura O'Neill, Kirsty Roberts, Margarete A Fabre, Nicholas Williams and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Nature medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 47 citations in OpenAlex.

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  11. The Molecular Pathology of Non-Malignant Haematological Disease.British journal of biomedical science · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Michael Spencer Chapman *Wellcome Sanger Institute, Hinxton, UK.ORCID 0000-0002-5320-8193
Alyssa H Cull *York Biomedical Research Institute, University of York, York, UK.
Marioara F CiuculescuDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.
Erica B EsrickDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.
Emily MitchellWellcome Sanger Institute, Hinxton, UK.
Hyunchul JungWellcome Sanger Institute, Hinxton, UK.
Laura O'NeillWellcome Sanger Institute, Hinxton, UK.
Kirsty RobertsWellcome Sanger Institute, Hinxton, UK.
Margarete A FabreWellcome Sanger Institute, Hinxton, UK.
Nicholas WilliamsWellcome Sanger Institute, Hinxton, UK.
Jyoti NangaliaWellcome Sanger Institute, Hinxton, UK.ORCID 0000-0001-7122-4608
Joanne QuintonYork Biomedical Research Institute, University of York, York, UK.
James M FoxYork Biomedical Research Institute, University of York, York, UK.
Danilo PellinHarvard Medical School, Boston, MA, USA.ORCID 0000-0002-2647-0508
Julie MakaniMuhimbili University of Health and Allied Sciences (MUHAS), Dar-es-Salaam, Tanzania.
Myriam ArmantDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0002-5205-3003
David A WilliamsDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA, USA. dawilliams@childrens.harvard.edu.ORCID 0000-0001-7057-6863
Peter J CampbellWellcome Sanger Institute, Hinxton, UK. pc8@sanger.ac.uk.ORCID 0000-0002-3921-0510
David G KentYork Biomedical Research Institute, University of York, York, UK. david.kent@york.ac.uk.ORCID 0000-0001-7871-8811
Boston Children's Hospital · USUniversity of York · GBWellcome Sanger Institute · GBWellcome/MRC Cambridge Stem Cell Institute · GBAstraZeneca (United Kingdom) · GBHarvard University · USImperial College Healthcare NHS Trust · GBMuhimbili University of Health and Allied Sciences · TZ

Funding

Gene therapy targeting BCL11A to induce fetal hemoglobin and reduce sickle hemoglobin in patients with Sickle Cell DiseaseR01HL137848 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI WILLIAMS, DAVID A · 2017 to 2021
$6.0M
The Sickle Pan-African Research Consortium (SPARCO)U24HL135881 · NHLBI · MUHIMBILI UNIVERSITY/ ALLIED HLTH SCIS · PI MAKANI, JULIE · 2017 to 2025
$5.3M
Gene therapy targeting BCL11A to induce fetal hemoglobin and reduce sickle hemoglobin in patients with Sickle Cell DiseaseOT2HL154815 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI WILLIAMS, DAVID A · 2020 to 2020
$1.2M
Medical Research Council MC_PC_17230NHLBI NIH HHS OT2 HL154815NHLBI NIH HHS R01 HL137848NHLBI NIH HHS U24 HL135881Wellcome TrustWellcome Trust 206194
6 · The paper itself

Abstract

Gene therapy (GT) provides a potentially curative treatment option for patients with sickle cell disease (SCD); however, the occurrence of myeloid malignancies in GT clinical trials has prompted concern, with several postulated mechanisms. Here, we used whole-genome sequencing to track hematopoietic stem cells (HSCs) from six patients with SCD at pre- and post-GT time points to map the somatic mutation and clonal landscape of gene-modified and unmodified HSCs. Pre-GT, phylogenetic trees were highly polyclonal and mutation burdens per cell were elevated in some, but not all, patients. Post-GT, no clonal expansions were identified among gene-modified or unmodified cells; however, an increased frequency of potential driver mutations associated with myeloid neoplasms or clonal hematopoiesis (DNMT3A- and EZH2-mutated clones in particular) was observed in both genetically modified and unmodified cells, suggesting positive selection of mutant clones during GT. This work sheds light on HSC clonal dynamics and the mutational landscape after GT in SCD, highlighting the enhanced fitness of some HSCs harboring pre-existing driver mutations. Future studies should define the long-term fate of mutant clones, including any contribution to expansions associated with myeloid neoplasms.

Indexed as

Anemia, Sickle CellNeoplasmsClone CellsGenetic TherapyHematopoiesisHematopoietic Stem CellsHumansMutationPhylogeny

Identifiers

PMID37973947
PMCPMC10719109
OpenAlexW4388728612

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.