Evidence map›Paper›PMID 37973932›Full record

ArticleScientific reports2023

Design and validation of a multiplex PCR method for the simultaneous quantification of Clostridium acetobutylicum, Clostridium carboxidivorans and Clostridium cellulovorans.

Laura Feliu-Paradeda, Sebastià Puig, Lluis Bañeras

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Laura Feliu-ParadedaMolecular Microbial Ecology Group, Institute of Aquatic Ecology, University of Girona, Carrer Maria Aurèlia Capmany 40, 17003, Girona, Spain.
Sebastià PuigLEQUiA, Institute of the Environment, University of Girona, Carrer Maria Aurèlia Capmany 69, 17003, Girona, Spain.
Lluis BañerasMolecular Microbial Ecology Group, Institute of Aquatic Ecology, University of Girona, Carrer Maria Aurèlia Capmany 40, 17003, Girona, Spain. lluis.banyeras@udg.edu.
University of Girona · ES

Funding

Generalitat de Catalunya 2021 FISDU00132Ministerio de Ciencia e Innovación PCI2019-111932-2Universitat de Girona UdG-AG-575
6 · The paper itself

Abstract

Co-cultures of clostridia with distinct physiological properties have emerged as an alternative to increase the production of butanol and other added-value compounds from biomass. The optimal performance of mixed tandem cultures may depend on the stability and fitness of each species in the consortium, making the development of specific quantification methods to separate their members crucial. In this study, we developed and tested a multiplex qPCR method targeting the 16S rRNA gene for the simultaneous quantification of Clostridium acetobutylicum, Clostridium carboxidivorans and Clostridium cellulovorans in co-cultures. Designed primer pairs and probes could specifically quantify the three Clostridium species with no cross-reactions thus allowing significant changes in their growth kinetics in the consortia to be detected and correlated with productivity. The method was used to test a suitable medium composition for simultaneous growth of the three species. We show that higher alcohol productions were obtained when combining C. carboxidivorans and C. acetobutylicum compared to individual cultures, and further improved (> 90%) in the triplet consortium. Altogether, the methodology could be applied to fermentation processes targeting butanol productions from lignocellulosic feedstocks with a higher substrate conversion efficiency.

Indexed as

Clostridium acetobutylicumClostridium cellulovorans1-ButanolButanolsClostridiumFermentationMultiplex Polymerase Chain ReactionRNA, Ribosomal, 16S1-ButanolButanolsRNA, Ribosomal, 16S

Identifiers

PMID37973932
PMCPMC10654501
OpenAlexW4388725984

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.