Evidence map›Paper›PMID 37971886›Full record

ArticleThe Journal of clinical investigation2023

Multiomic screening of invasive GBM cells reveals targetable transsulfuration pathway alterations.

Joseph H Garcia, Erin A Akins, Saket Jain, Kayla J Wolf, Jason Zhang, Nikita Choudhary, Meeki Lad, Poojan Shukla, Jennifer Rios, Kyounghee Seo and 7 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 31 citations in OpenAlex.

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  14. Targeting macro- and micro-nutrient regulation of HNeurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Joseph H GarciaDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Erin A AkinsDepartment of Bioengineering, UC Berkeley, Berkeley, California, USA.
Saket JainDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Kayla J WolfDepartment of Bioengineering, UC Berkeley, Berkeley, California, USA.
Jason ZhangDepartment of Bioengineering, UC Berkeley, Berkeley, California, USA.
Nikita ChoudharyDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Meeki LadDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Poojan ShuklaDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Jennifer RiosDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Kyounghee SeoDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Sabraj A GillDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
William H CarsonDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Luis R CaretteDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Allison C ZhengDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
David R RaleighDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
Sanjay KumarDepartment of Bioengineering, UC Berkeley, Berkeley, California, USA.
Manish K AghiDepartment of Neurosurgery, UCSF, San Francisco, California, USA.
University of California, San Francisco · USUniversity of California, Berkeley · USQB3 · US

Funding

Tumor cell and microenvironment changes causing antiangiogenic therapy resistanceR01NS079697 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGHI, MANISH · 2013 to 2021
$3.2M
Biophysical Control of Cell Form and Function by Single Actomyosin Stress Fibers: Instrument SupplementR01GM122375 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2017 to 2025
$2.7M
Mechanisms of Hedgehog signaling in glioblastomaR01CA251221 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RALEIGH, DAVID R · 2021 to 2025
$2.6M
Modeling and druggable-genome screening of glioblastoma invasion using regional biopsy-guided biomaterials systemsR01CA227136 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGHI, MANISH · 2018 to 2022
$2.2M
Retroviral RLI immunomodulatory gene therapy for glioblastomaR01NS123808 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Manish Aghi · 2022 to 2026
$2.1M
Mechanisms of adhesion and invasion in hyaluronic acid matricesR01CA260443 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2021 to 2025
$1.8M
A 3D Model of the Perivascular Niche to Investigate Glioblastoma InvasionF31CA228317 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI WOLF, KAYLA · 2018 to 2019
$74k
NCI NIH HHS F31 CA228317NCI NIH HHS R01 CA227136NCI NIH HHS R01 CA251221NCI NIH HHS R01 CA260443NIGMS NIH HHS R01 GM122375NINDS NIH HHS R01 NS079697NINDS NIH HHS R01 NS123808
6 · The paper itself

Abstract

While the poor prognosis of glioblastoma arises from the invasion of a subset of tumor cells, little is known of the metabolic alterations within these cells that fuel invasion. We integrated spatially addressable hydrogel biomaterial platforms, patient site-directed biopsies, and multiomics analyses to define metabolic drivers of invasive glioblastoma cells. Metabolomics and lipidomics revealed elevations in the redox buffers cystathionine, hexosylceramides, and glucosyl ceramides in the invasive front of both hydrogel-cultured tumors and patient site-directed biopsies, with immunofluorescence indicating elevated reactive oxygen species (ROS) markers in invasive cells. Transcriptomics confirmed upregulation of ROS-producing and response genes at the invasive front in both hydrogel models and patient tumors. Among oncologic ROS, H2O2 specifically promoted glioblastoma invasion in 3D hydrogel spheroid cultures. A CRISPR metabolic gene screen revealed cystathionine γ-lyase (CTH), which converts cystathionine to the nonessential amino acid cysteine in the transsulfuration pathway, to be essential for glioblastoma invasion. Correspondingly, supplementing CTH knockdown cells with exogenous cysteine rescued invasion. Pharmacologic CTH inhibition suppressed glioblastoma invasion, while CTH knockdown slowed glioblastoma invasion in vivo. Our studies highlight the importance of ROS metabolism in invasive glioblastoma cells and support further exploration of the transsulfuration pathway as a mechanistic and therapeutic target.

Indexed as

GlioblastomaCystathionineCysteineHumansHydrogelsHydrogen PeroxideMultiomicsReactive Oxygen SpeciesCystathionineCysteineHydrogelsHydrogen PeroxideReactive Oxygen SpeciesAmino acid metabolismBioenergeticsBrain cancerMetabolismOncology

Identifiers

PMID37971886
PMCPMC10849762
OpenAlexW4388722283

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.