Evidence map›Paper›PMID 37967559›Full record

ArticleCell chemical biology2024

Proteomics from compartment-specific APEX2 labeling in Mycobacterium tuberculosis reveals Type VII secretion substrates in the cell wall.

Neetika Jaisinghani, Mary L Previti, Joshua Andrade, Manor Askenazi, Beatrix Ueberheide, Jessica C Seeliger

Open access · greenAbstract read
In one paragraph

Article in Cell chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. International journal of nanomedicine · 2026
    Article
  3. Review
  4. Future Research Directions on Mycobacterium tuberculosis Proteins.Advances in experimental medicine and biology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Protease shaving ofMicrobiology spectrum · 2025
    Article
  13. Article
  14. Protease shaving ofbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Neetika JaisinghaniDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Mary L PrevitiDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Joshua AndradeProteomics Laboratory, New York University Grossman School of Medicine, New York, NY 10016, USA.
Manor AskenaziBiomedical Hosting LLC, Arlington, MA 02140, USA.
Beatrix UeberheideProteomics Laboratory, New York University Grossman School of Medicine, New York, NY 10016, USA; Department of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Jessica C SeeligerDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA. Electronic address: jessica.seeliger@stonybrook.edu.
New York University · USStony Brook University · USStony Brook Medicine · US

Funding

Dynamics of Ligand Binding and Protein Kinase Regulation_RenewalR35GM119437 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Markus A Seeliger · 2016 to 2026
$6.5M
Chemical Biology Training InterfaceT32GM136572 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI ELIZABETH M BOON, Jessica Chuang Seeliger · 2020 to 2026
$2.9M
Untangling the Inner Workings of the Mycobacterial Cell EnvelopeR35GM128552 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SEELIGER, JESSICA CHUANG · 2018 to 2022
$2.1M
Acquisition of an Orbitrap Elite Mass Spectrometer with ETDS10OD010582 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI UEBERHEIDE, BEATRIX MAGDALENA · 2013 to 2013
$600k
Exploration of the Mycobacterial Cell Envelope Proteome by Protein Labeling in Live CellsR21AI126044 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI SEELIGER, JESSICA CHUANG · 2016 to 2017
$436k
NIAID NIH HHS R21 AI126044NIGMS NIH HHS R35 GM119437NIGMS NIH HHS R35 GM128552NIGMS NIH HHS T32 GM136572NIH HHS S10 OD010582
6 · The paper itself

Abstract

The cell wall of mycobacteria plays a key role in interactions with the environment. Its ability to act as a selective filter is crucial to bacterial survival. Proteins in the cell wall enable this function by mediating the import and export of diverse metabolites, from ions to lipids to proteins. Identifying cell wall proteins is an important step in assigning function, especially as many mycobacterial proteins lack functionally characterized homologues. Current methods for protein localization have inherent limitations that reduce accuracy. Here we showed that although chemical labeling of live cells did not exclusively label surface proteins, protein tagging by the engineered peroxidase APEX2 within live Mycobacterium tuberculosis accurately identified the cytosolic and cell wall proteomes. Our data indicate that substrates of the virulence-associated Type VII ESX secretion system are exposed to the periplasm, providing insight into the currently unknown mechanism by which these proteins cross the mycobacterial cell envelope.

Indexed as

Mycobacterium tuberculosisType VII Secretion SystemsAntigens, BacterialBacterial ProteinsCell WallProteomicsAntigens, BacterialBacterial ProteinsType VII Secretion SystemsAPEX2cell wallESXmycobacteriaperiplasmproximity labelingtuberculosisType VII secretion

Identifiers

PMID37967559
PMCPMC11106752
OpenAlexW4388673690

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.