Evidence map›Paper›PMID 37967183›Full record

ArticleScience advances2023

Two-color coincidence single-molecule pulldown for the specific detection of disease-associated protein aggregates.

Rebecca S Saleeb, Craig Leighton, Ji-Eun Lee, Judi O'Shaughnessy, Kiani Jeacock, Alexandre Chappard, Robyn Cumberland, Tianxiao Zhao, Sarah R Ball, Margaret Sunde and 9 more

Abstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Rebecca S SaleebEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0002-6587-9867
Craig LeightonEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0009-0008-1397-1486
Ji-Eun LeeEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0001-5954-2638
Judi O'ShaughnessyEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0009-0001-2014-9078
Kiani JeacockEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0001-9978-7963
Alexandre ChappardEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0002-9522-2575
Robyn CumberlandEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.
Tianxiao ZhaoEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0002-8078-0638
Sarah R BallSchool of Medical Sciences, Faculty of Medicine and Health, and Sydney Nano, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0002-5755-5221
Margaret Sunde
David J ClarkeEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0002-3741-2952
Kristin PichéStressmarq Biosciences Inc., Suite 117-1537 Hillside Ave, Victoria, V8T 2C1 BC, Canada.ORCID 0009-0003-9409-0907
Jacob A McPhailStressmarq Biosciences Inc., Suite 117-1537 Hillside Ave, Victoria, V8T 2C1 BC, Canada.ORCID 0000-0003-1490-808X
Ariel LouwrierStressmarq Biosciences Inc., Suite 117-1537 Hillside Ave, Victoria, V8T 2C1 BC, Canada.ORCID 0000-0003-1472-5494
Rachel AngersUCB Biopharma S.P.R.L., Braine l'Alleud, Belgium.ORCID 0009-0009-5421-8199
Sonia GandhiThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Patrick DowneyUCB Biopharma S.P.R.L., Braine l'Alleud, Belgium.
Tilo KunathCentre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, The University of Edinburgh, Edinburgh EH16 4UU, UK.ORCID 0000-0002-8805-7356
Mathew H HorrocksEaStCHEM School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, UK.ORCID 0000-0001-5495-5492

Funding

The Physical Biology of Neurodegeneration in Sporadic Amyotrophic Lateral Sclerosis/Frontotemporal DementiaR01NS127186 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOLT, LIAM J, PHATNANI, HEMALI · 2021 to 2025
$8.2M
Medical Research Council MR/K017276/1Medical Research Council MR/T008199/1Medical Research Council MR/W031485/1NINDS NIH HHS R01 NS127186
6 · The paper itself

Abstract

Protein misfolding and aggregation is a characteristic of many neurodegenerative disorders, including Alzheimer's and Parkinson's disease. The oligomers generated during aggregation are likely involved in disease pathogenesis and present promising biomarker candidates. However, owing to their small size and low concentration, specific tools to quantify and characterize aggregates in complex biological samples are still lacking. Here, we present single-molecule two-color aggregate pulldown (STAPull), which overcomes this challenge by probing immobilized proteins using orthogonally labeled detection antibodies. By analyzing colocalized signals, we can eliminate monomeric protein and specifically quantify aggregated proteins. Using the aggregation-prone alpha-synuclein protein as a model, we demonstrate that this approach can specifically detect aggregates with a limit of detection of 5 picomolar. Furthermore, we show that STAPull can be used in a range of samples, including human biofluids. STAPull is applicable to protein aggregates from a variety of disorders and will aid in the identification of biomarkers that are crucial in the effort to diagnose these diseases.

Indexed as

Parkinson DiseaseProtein AggregatesHumansProtein Aggregates

Identifiers

PMID37967183
PMCPMC10651132

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.