Evidence map›Paper›PMID 37965021›Full record

ArticleFrontiers in plant science2023

Evaluating the impact of modeling the family effect for clonal selection in potato-breeding programs.

Vinicius Samuel Martins, Mario Henrique Murad Leite Andrade, Leticia Novais Padua, Luciana Aparecida Miguel, Claudio Carlos Fernandes Filho, Marcio Lisboa Guedes, Jose Airton Rodrigues Nunes, Leo Jr Hoffmann, Lincoln Zotarelli, Márcio Fernando Ribeiro de Jr Resende and 2 more

Abstract read
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Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Vinicius Samuel MartinsDepartamento de Biologia, Universidade Federal de Lavras, Lavras, Brazil.
Mario Henrique Murad Leite AndradeSchool of Food and Agriculture, University of Maine, Orono, ME, United States.
Leticia Novais PaduaDepartamento de Biologia, Universidade Federal de Lavras, Lavras, Brazil.
Luciana Aparecida MiguelDepartamento de Biologia, Universidade Federal de Lavras, Lavras, Brazil.
Claudio Carlos Fernandes FilhoCentro de Tecnologia Canavieira (CTC), Piracicaba, Brazil.
Marcio Lisboa GuedesRede Interuniversitária para o Desenvolvimento do Setor Sucroenergético (RIDESA), Universidade Federal de Goiás, Goiânia, Brazil.
Jose Airton Rodrigues NunesDepartamento de Biologia, Universidade Federal de Lavras, Lavras, Brazil.
Leo Jr HoffmannDepartment of Horticultural Sciences, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, United States.
Lincoln ZotarelliDepartment of Horticultural Sciences, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, United States.
Márcio Fernando Ribeiro de Jr ResendeDepartment of Horticultural Sciences, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, United States.
Pedro Crescêncio Souza CarneiroDepartamento de Biologia, Universidade Federal de Viçosa, Viçosa, Brazil.
Tiago de Souza MarçalDepartamento de Biologia, Universidade Federal de Lavras, Lavras, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Because of its wide distribution, high yield potential, and short cycle, the potato has become essential for global food security. However, the complexity of tetrasomic inheritance, the high level of heterozygosity of the parents, the low multiplication rate of tubers, and the genotype-by-environment interactions impose severe challenges on tetraploid potato-breeding programs. The initial stages of selection take place in experiments with low selection accuracy for many of the quantitative traits of interest, for example, tuber yield. The goal of this study was to investigate the contribution of incorporating a family effect in the estimation of the total genotypic effect and selection of clones in the initial stage of a potato-breeding program. The evaluation included single trials (STs) and multi-environment trials (METs). A total of 1,280 clones from 67 full-sib families from the potato-breeding program at Universidade Federal de Lavras were evaluated for the traits total tuber yield and specific gravity. These clones were distributed in six evaluated trials that varied according to the heat stress level: without heat stress, moderate heat stress, and high heat stress. To verify the importance of the family effect, models with and without the family effect were compared for the analysis of ST and MET data for both traits. The models that included the family effect were better adjusted in the ST and MET data analyses for both traits, except when the family effect was not significant. Furthermore, the inclusion of the family effect increased the selective efficiency of clones in both ST and MET analyses via an increase in the accuracy of the total genotypic value. These same models also allowed the prediction of clone effects more realistically, as the variance components associated with family and clone effects within a family were not confounded. Thus, clonal selection based on the total genotypic value, combining the effects of family and clones within a family, proved to be a good alternative for potato-breeding programs that can accommodate the logistic and data tracking required in the breeding program.

Indexed as

accuracyautotetraploid geneticsG×E interactionsnested structureSolanum tuberosum L.tuber yield

Identifiers

PMID37965021
PMCPMC10642306

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.