Evidence map›Paper›PMID 37964477›Full record

ArticleProteins2025

Effects of ion type and concentration on the structure and aggregation of the amyloid peptide A

Eva Smorodina, Batuhan Kav, Hebah Fatafta, Birgit Strodel

Open access · hybridAbstract read
In one paragraph

Article in Proteins, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Eva SmorodinaInstitute of Biological Information Processing: Structural Biochemistry, Forschungszentrum Jülich, Jülich, Germany.ORCID https://orcid.org/0000-0002-5457-5163
Batuhan KavInstitute of Biological Information Processing: Structural Biochemistry, Forschungszentrum Jülich, Jülich, Germany.
Hebah FataftaInstitute of Biological Information Processing: Structural Biochemistry, Forschungszentrum Jülich, Jülich, Germany.
Birgit StrodelInstitute of Biological Information Processing: Structural Biochemistry, Forschungszentrum Jülich, Jülich, Germany.ORCID https://orcid.org/0000-0002-8734-7765
Forschungszentrum Jülich · DEOslo University Hospital · NO

Funding

Bundesministerium für Bildung und Forschung
6 · The paper itself

Abstract

Among the various factors controlling the amyloid aggregation process, the influences of ions on the aggregation rate and the resulting structures are important aspects to consider, which can be studied by molecular simulations. There is a wide variety of protein force fields and ion models, raising the question of which model to use in such studies. To address this question, we perform molecular dynamics simulations of Aβ

Indexed as

Amyloid beta-PeptidesCalcium ChloridePeptide FragmentsAlzheimer DiseaseCalciumHumansIonsMolecular Dynamics SimulationProtein AggregatesProtein BindingProtein Conformation, beta-StrandSodium ChlorideAmyloid beta-Peptidesamyloid beta-protein (16-22)CalciumCalcium ChlorideIonsPeptide FragmentsProtein AggregatesSodium ChlorideAlzheimer's diseaseamyloid aggregationamyloid‐betaforce fieldsion parametersMD simulations

Identifiers

PMID37964477
PMCPMC12260276
OpenAlexW4388691273

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.