Evidence map›Paper›PMID 37963815›Full record

ArticleAngewandte Chemie (International ed. in English)2024

Reconstitution of the Final Steps in the Biosynthesis of Valanimycin Reveals the Origin of Its Characteristic Azoxy Moiety.

Ziyang Zheng, Jin Xiong, Junling Bu, Daan Ren, Yu-Hsuan Lee, Yu-Cheng Yeh, Chia-I Lin, Ronald Parry, Yisong Guo, Hung-Wen Liu

Open access · bronzeAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural Basis for the Catalytic Mechanism of ATP-Dependent Diazotase CmaA6.Angewandte Chemie (International ed. in English) · 2025
    Article
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  5. Article
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Ziyang ZhengDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.ORCID 0009-0004-9700-4178
Jin XiongDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA-15213, USA.
Junling BuDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, University of Texas at Austin, Austin, TX-78712, USA.
Daan RenDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.ORCID 0000-0002-1309-5382
Yu-Hsuan LeeDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.ORCID 0009-0005-0915-7172
Yu-Cheng YehDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.
Chia-I LinDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.
Ronald ParryDepartment of Chemistry, Rice University, Houston, TX-77005, USA.
Yisong GuoDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA-15213, USA.
Hung-Wen LiuDepartment of Chemistry, University of Texas at Austin, Austin, TX-78712, USA.ORCID 0000-0001-8953-4794
The University of Texas at Austin · USAustin College · USCarnegie Mellon University · USRice University · US

Funding

Three-Membered Ring Metabolites, Inhibition &FormationR01GM040541 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LIU, HUNG-WEN · 1989 to 2023
$7.4M
Mechanistic Studies of Deoxy Sugar BiosynthesisR01GM035906 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LIU, HUNG-WEN · 1986 to 2023
$6.1M
Elucidate Mechanisms of Quinolone Alkaloid Biosynthesis via Iron(II)/2-Oxoglutarate Dependent Enzymes: Diverse, but Controlled ReactivityR01GM125924 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI Yisong Guo · 2018 to 2026
$3.3M
NIGMS NIH HHS GM040541NIGMS NIH HHS GM125924NIGMS NIH HHS R01 GM035906NIGMS NIH HHS R01 GM040541NIGMS NIH HHS R01 GM125924
6 · The paper itself

Abstract

Valanimycin is an azoxy-containing natural product isolated from the fermentation broth of Streptomyces viridifaciens MG456-hF10. While the biosynthesis of valanimycin has been partially characterized, how the azoxy group is constructed remains obscure. Herein, the membrane protein VlmO and the putative hydrazine synthetase ForJ from the formycin biosynthetic pathway are demonstrated to catalyze N-N bond formation converting O-(l-seryl)-isobutyl hydroxylamine into N-(isobutylamino)-l-serine. Subsequent installation of the azoxy group is shown to be catalyzed by the non-heme diiron enzyme VlmB in a reaction in which the N-N single bond in the VlmO/ForJ product is oxidized by four electrons to yield the azoxy group. The catalytic cycle of VlmB appears to begin with a resting μ-oxo diferric complex in VlmB, as supported by Mössbauer spectroscopy. This study also identifies N-(isobutylamino)-d-serine as an alternative substrate for VlmB leading to two azoxy regioisomers. The reactions catalyzed by the kinase VlmJ and the lyase VlmK during the final steps of valanimycin biosynthesis are established as well. The biosynthesis of valanimycin was thus fully reconstituted in vitro using the enzymes VlmO/ForJ, VlmB, VlmJ and VlmK. Importantly, the VlmB-catalyzed reaction represents the first example of enzyme-catalyzed azoxy formation and is expected to proceed by an atypical mechanism.

Indexed as

Azo CompoundsAzo CompoundsvalanimycinAzoxy GroupBiosynthesisHydrazineNon-Heme Diiron EnzymesValanimycin

Identifiers

PMID37963815
PMCPMC10843709
OpenAlexW4388680717

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.