Evidence map›Paper›PMID 37963232›Full record

ArticleACS synthetic biology2023

GENETTA: a Network-Based Tool for the Analysis of Complex Genetic Designs.

Matthew Crowther, Anil Wipat, Ángel Goñi-Moreno

Abstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Matthew CrowtherSchool of Computing, Newcastle University, Newcastle Upon Tyne, NE4 5TG, United Kingdom.
Anil WipatSchool of Computing, Newcastle University, Newcastle Upon Tyne NE4 5TG, United Kingdom.
Ángel Goñi-MorenoCentro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC), Madrid 28223, Spain.ORCID 0000-0002-2097-2507

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GENETTA is a software tool that transforms synthetic biology designs into networks using graph theory for analysis and manipulation. By representing complex data as interconnected points, GENETTA allows dynamic customization of visualizations, including interaction networks and parts hierarchies. It can also merge design data from multiple databases, providing a unified perspective. The generated interactive network can be edited by adding nodes and edges, simplifying changes to existing design files. This article presents GENETTA and its features through specific use cases, showcasing its practical applications.

Indexed as

SoftwareSynthetic Biologycomputer-aided designdata analysisgenetic designknowledge graphnetworksSBOL

Identifiers

PMID37963232
PMCPMC7618913

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.