Evidence map›Paper›PMID 37961150›Full record

ArticlebioRxiv : the preprint server for biology2023

Waveform-based classification of dentate spikes.

Rodrigo M M Santiago, Vítor Lopes-Dos-Santos, Emily A Aery Jones, Yadong Huang, David Dupret, Adriano B L Tort

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Rodrigo M M SantiagoComputational Neurophysiology Lab, Brain Institute, Federal University of Rio Grande do Norte, Natal, RN, 59078-900, Brazil.ORCID 0000-0001-8112-5494
Vítor Lopes-Dos-SantosMedical Research Council Brain Network Dynamics Unit, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.ORCID 0000-0002-1858-0125
Emily A Aery JonesDepartment of Neurobiology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0001-8180-3267
Yadong HuangGladstone Institute of Neurological Disease, Gladstone Institutes, San Francisco, CA 94158, USA.ORCID 0000-0002-5871-4589
David DupretMedical Research Council Brain Network Dynamics Unit, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.ORCID 0000-0002-0040-1766
Adriano B L TortComputational Neurophysiology Lab, Brain Institute, Federal University of Rio Grande do Norte, Natal, RN, 59078-900, Brazil.ORCID 0000-0002-9877-7816
Universidade Federal do Rio Grande do Norte · BRUniversity of Oxford · GBGladstone Institutes · USStanford University · US

Funding

Dynamics of Hippocampal Inputs in Alzheimer's DiseaseK99NS134734 · NINDS · STANFORD UNIVERSITY · PI AERY JONES, EMILY ASTER · 2023 to 2024
$246k
Medical Research Council MC_UU_00003/4Medical Research Council MC_UU_12024/3Medical Research Council MR/W004860/1NINDS NIH HHS K99 NS134734
6 · The paper itself

Abstract

Synchronous excitatory discharges from the entorhinal cortex (EC) to the dentate gyrus (DG) generate fast and prominent patterns in the hilar local field potential (LFP), called dentate spikes (DSs). As sharp-wave ripples in CA1, DSs are more likely to occur in quiet behavioral states, when memory consolidation is thought to take place. However, their functions in mnemonic processes are yet to be elucidated. The classification of DSs into types 1 or 2 is determined by their origin in the lateral or medial EC, as revealed by current source density (CSD) analysis, which requires recordings from linear probes with multiple electrodes spanning the DG layers. To allow the investigation of the functional role of each DS type in recordings obtained from single electrodes and tetrodes, which are abundant in the field, we developed an unsupervised method using Gaussian mixture models to classify such events based on their waveforms. Our classification approach achieved high accuracies (> 80%) when validated in 8 mice with DG laminar profiles. The average CSDs, waveforms, rates, and widths of the DS types obtained through our method closely resembled those derived from the CSD-based classification. As an example of application, we used the technique to analyze single-electrode LFPs from apolipoprotein (apo) E3 and apoE4 knock-in mice. We observed that the latter group, which is a model for Alzheimer's disease, exhibited wider DSs of both types from a young age, with a larger effect size for DS type 2, likely reflecting early pathophysiological alterations in the EC-DG network, such as hyperactivity. In addition to the applicability of the method in expanding the study of DS types, our results show that their waveforms carry information about their origins, suggesting different underlying network dynamics and roles in memory processing.

Indexed as

current source densitydentate gyrusdentate spikeentorhinal cortexunsupervised classificationwaveform

Identifiers

PMID37961150
PMCPMC10634814
OpenAlexW4388188585

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.