Evidence map›Paper›PMID 37961123›Full record

ArticlebioRxiv : the preprint server for biology2023

SuPreMo: a computational tool for streamlining

Ketrin Gjoni, Katherine S Pollard

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Ketrin GjoniGladstone Institute of Data Science and Biotechnology, San Francisco, CA 94158, USA.ORCID 0000-0001-5833-1089
Katherine S PollardGladstone Institute of Data Science and Biotechnology, San Francisco, CA 94158, USA.ORCID 0000-0002-9870-6196

Funding

Genetic determinants of 4D genome folding in human cardiac developmentU01HL157989 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, POLLARD, KATHERINE S. · 2020 to 2024
$3.8M
Deciphering the 3D genome of pediatric brain tumorsR03OD034499 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI DAHMANE, NADIA, POLLARD, KATHERINE S. · 2022 to 2022
$391k
NHLBI NIH HHS U01 HL157989NIH HHS R03 OD034499
6 · The paper itself

Abstract

Computationally editing genome sequences is a common bioinformatics task, but current approaches have limitations, such as incompatibility with structural variants, challenges in identifying responsible sequence perturbations, and the need for vcf file inputs and phased data. To address these bottlenecks, we present Sequence Mutator for Predictive Models (SuPreMo), a scalable and comprehensive tool for performing

Identifiers

PMID37961123
PMCPMC10635135

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.