Evidence map›Paper›PMID 37961106›Full record

ArticlebioRxiv : the preprint server for biology2023

Sequence-ensemble-function relationships for disordered proteins in live cells.

Ryan J Emenecker, Karina Guadalupe, Nora M Shamoon, Shahar Sukenik, Alex S Holehouse

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 23 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ryan J EmeneckerDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO.ORCID 0000-0001-7055-2773
Karina GuadalupeDepartment of Chemistry and Biochemistry, University of California, Merced, CA.ORCID 0000-0001-8316-0357
Nora M ShamoonCenter for Cellular and Biomolecular Machines, University of California, Merced, CA.ORCID 0000-0002-1466-1286
Shahar SukenikDepartment of Chemistry and Biochemistry, University of California, Merced, CA.ORCID 0000-0003-3855-9574
Alex S HolehouseDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO.ORCID 0000-0002-4155-5729
University of California, Merced · USWashington University in St. Louis · USSyracuse University · US

Funding

Uncovering the structural underpinnings of function in disordered transcription factor regionsR35GM137926 · NIGMS · UNIVERSITY OF CALIFORNIA, MERCED · PI Shahar Sukenik · 2020 to 2026
$2.5M
Uncovering the regulatory logic of gene expression encoded by disordered regionsDP2CA290639 · NCI · WASHINGTON UNIVERSITY · PI Alex S Holehouse · 2023 to 2026
$2.3M
NCI NIH HHS DP2 CA290639NIGMS NIH HHS R35 GM137926
6 · The paper itself

Abstract

Intrinsically disordered protein regions (IDRs) are ubiquitous across all kingdoms of life and play a variety of essential cellular roles. IDRs exist in a collection of structurally distinct conformers known as an ensemble. An IDR's amino acid sequence determines its ensemble, which in turn can play an important role in dictating molecular function. Yet a clear link connecting IDR sequence, its ensemble properties, and its molecular function in living cells has not been directly established. Here, we set out to test this sequence-ensemble-function paradigm using a novel computational method (GOOSE) that enables the rational design of libraries of IDRs by systematically varying specific sequence properties. Using ensemble FRET, we measured the ensemble dimensions of a library of rationally designed IDRs in human-derived cell lines, revealing how IDR sequence influences ensemble dimensions

Identifiers

PMID37961106
PMCPMC10634935
OpenAlexW4388141969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.