Evidence map›Paper›PMID 37958807›Full record

ArticleInternational journal of molecular sciences2023

Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.

Annalisa Paparella, Alberto L'Abbate, Donato Palmisano, Gerardina Chirico, David Porubsky, Claudia R Catacchio, Mario Ventura, Evan E Eichler, Flavia A M Maggiolini, Francesca Antonacci

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. Complete sequencing of ape genomes.bioRxiv : the preprint server for biology · 2024
    Article
  8. Structural polymorphism and diversity of human segmental duplications.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Annalisa PaparellaDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.
Alberto L'AbbateInstitute of Biomembranes, Bioenergetics, and Molecular Biotechnology (IBIOM), 70125 Bari, Italy.ORCID 0000-0002-5995-2001
Donato PalmisanoDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.
Gerardina ChiricoDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.
David PorubskyDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0001-8414-8966
Claudia R CatacchioDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.ORCID 0000-0002-2166-723X
Mario VenturaDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.ORCID 0000-0001-7762-8777
Evan E EichlerDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Flavia A M MaggioliniDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.ORCID 0000-0001-6832-9388
Francesca AntonacciDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70125 Bari, Italy.ORCID 0000-0002-5833-6186
University of Bari Aldo Moro · ITCereal Research Centre · ITHoward Hughes Medical Institute · USInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITUniversity of Washington · US

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
Sequence-resolved structural variation of human genomesR01HG010169 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2018 to 2026
$4.5M
NHGRI NIH HHS R01 HG002385NHGRI NIH HHS R01 HG010169NIH HHS HG002385, HG010169
6 · The paper itself

Abstract

The impact of segmental duplications on human evolution and disease is only just starting to unfold, thanks to advancements in sequencing technologies that allow for their discovery and precise genotyping. The 15q11-q13 locus is a hotspot of recurrent copy number variation associated with Prader-Willi/Angelman syndromes, developmental delay, autism, and epilepsy and is mediated by complex segmental duplications, many of which arose recently during evolution. To gain insight into the instability of this region, we characterized its architecture in human and nonhuman primates, reconstructing the evolutionary history of five different inversions that rearranged the region in different species primarily by accumulation of segmental duplications. Comparative analysis of human and nonhuman primate duplication structures suggests a human-specific gain of directly oriented duplications in the regions flanking the

Indexed as

Autistic DisorderPrader-Willi SyndromeAnimalsChromosomes, Human, Pair 15DNA Copy Number VariationsGene DuplicationHumansPrimatesSegmental Duplications, Genomiccopy number variantscore dupliconsevolutioninversionssegmental duplications

Identifiers

PMID37958807
PMCPMC10648317
OpenAlexW4388087106

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.