Evidence map›Paper›PMID 37957925›Full record

ReviewWiley interdisciplinary reviews. RNA2023

Exploring the interplay between PARP1 and circRNA biogenesis and function.

Hejer Dhahri, Yvonne N Fondufe-Mittendorf

Open access · hybridAbstract readReview
In one paragraph

Review in Wiley interdisciplinary reviews. RNA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hejer DhahriDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, Kentucky, USA.ORCID https://orcid.org/0009-0007-8607-2222
Yvonne N Fondufe-MittendorfDepartment of Epigenetics, Van Andel Research Institute, Grand Rapids, Michigan, USA.ORCID https://orcid.org/0000-0002-2551-9920
Van Andel Institute · US

Funding

Molecular mechanisms of iAs-mediated carcinogenesis through the lens of histone H2B variantsR01ES034253 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI Yvonne Nsokika Fondufe-Mittendorf · 2022 to 2026
$3.3M
Molecular Underpinnings in the Establishment of an Oncogenic 3D Genome inResponse to Environmental Arsenic ExposureR01ES031846 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI FONDUFE-MITTENDORF, YVONNE NSOKIKA · 2020 to 2024
$2.7M
circSATB2, a novel regulator of arsenic-induced carcinogenesisR01ES036051 · NIEHS · VAN ANDEL RESEARCH INSTITUTE · PI Yvonne Nsokika Fondufe-Mittendorf · 2024 to 2026
$1.9M
The role of chromatin structural and epigenetic changes in arsenic-induced gene expressionR01ES024478 · NIEHS · UNIVERSITY OF KENTUCKY · PI FONDUFE-MITTENDORF, YVONNE NSOKIKA · 2015 to 2019
$1.8M
NIEHS NIH HHS R01 ES024478NIEHS NIH HHS R01 ES031846NIEHS NIH HHS R01 ES034253NIEHS NIH HHS R01 ES036051NIH HHS R01 ES024478NIH HHS R01 ES034253
6 · The paper itself

Abstract

PARP1 (poly-ADP-ribose polymerase 1) is a multidomain protein with a flexible and self-folding structure that allows it to interact with a wide range of biomolecules, including nucleic acids and target proteins. PARP1 interacts with its target molecules either covalently via PARylation or non-covalently through its PAR moieties induced by auto-PARylation. These diverse interactions allow PARP1 to participate in complex regulatory circuits and cellular functions. Although the most studied PARP1-mediated functions are associated with DNA repair and cellular stress response, subsequent discoveries have revealed additional biological functions. Based on these findings, PARP1 is now recognized as a major modulator of gene expression. Several discoveries show that this multifunctional protein has been intimately connected to several steps of mRNA biogenesis, from transcription initiation to mRNA splicing, polyadenylation, export, and translation of mRNA to proteins. Nevertheless, our understanding of PARP1's involvement in the biogenesis of both coding and noncoding RNA, notably circular RNA (circRNA), remains restricted. In this review, we outline the possible roles of PARP1 in circRNA biogenesis. A full examination of the regulatory roles of PARP1 in nuclear processes with an emphasis on circRNA may reveal new avenues to control dysregulation implicated in the pathogenesis of several diseases such as neurodegenerative disorders and cancers. This article is categorized under: RNA Interactions with Proteins and Other Molecules > Protein-RNA Interactions: Functional Implications Regulatory RNAs/RNAi/Riboswitches > Regulatory RNAs RNA Processing > Splicing Regulation/Alternative Splicing.

Indexed as

chromatincircular RNAPARP1RNA polymerase kineticssplicing

Identifiers

PMID37957925
PMCPMC11089078
OpenAlexW4388669958

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.