Evidence map›Paper›PMID 37954575›Full record

ArticleNAR genomics and bioinformatics2023

Accumulation of 8-oxodG within the human mitochondrial genome positively associates with transcription.

Giovanni Scala, Susanna Ambrosio, Margherita Menna, Francesca Gorini, Carmen Caiazza, Marcus S Cooke, Barbara Majello, Stefano Amente

Open access · goldAbstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Giovanni ScalaDepartment of Biology, University of Naples Federico II, 80138 Naples, Italy.
Susanna AmbrosioDepartment of Biology, University of Naples Federico II, 80138 Naples, Italy.
Margherita MennaDepartment of Biology, University of Naples Federico II, 80138 Naples, Italy.
Francesca GoriniDepartment of Molecular Medicine and Medical Biotechnologies, University of Naples Federico II, 80131 Naples, Italy.
Carmen CaiazzaDepartment of Biology, University of Naples Federico II, 80138 Naples, Italy.
Marcus S CookeOxidative Stress Group, Department of Molecular Biosciences, University of South Florida, Tampa, FL 33620, USA.
Barbara MajelloDepartment of Biology, University of Naples Federico II, 80138 Naples, Italy.
Stefano AmenteDepartment of Molecular Medicine and Medical Biotechnologies, University of Naples Federico II, 80131 Naples, Italy.ORCID https://orcid.org/0000-0003-0612-6096
University of Naples Federico II · ITUniversity of South Florida · US

Funding

Urinary DNA Adductomics for the Assessment of Exposure to Cancer Risk FactorsR01ES030557 · NIEHS · UNIVERSITY OF SOUTH FLORIDA · PI COOKE, MARCUS STANLEY, HU, CHIUNG-WEN · 2019 to 2023
$1.7M
NIEHS NIH HHS R01 ES030557
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) can be subject to internal and environmental stressors that lead to oxidatively generated damage and the formation of 8-oxo-7,8-dihydro-2'-deoxyguanine (8-oxodG). The accumulation of 8-oxodG has been linked to degenerative diseases and aging, as well as cancer. Despite the well-described implications of 8-oxodG in mtDNA for mitochondrial function, there have been no reports of mapping of 8-oxodG across the mitochondrial genome. To address this, we used OxiDIP-Seq and mapped 8-oxodG levels in the mitochondrial genome of human MCF10A cells. Our findings indicated that, under steady-state conditions, 8-oxodG is non-uniformly distributed along the mitochondrial genome, and that the longer non-coding region appeared to be more protected from 8-oxodG accumulation compared with the coding region. However, when the cells have been exposed to oxidative stress, 8-oxodG preferentially accumulated in the coding region which is highly transcribed as H1 transcript. Our data suggest that 8-oxodG accumulation in the mitochondrial genome is positively associated with mitochondrial transcription.

Identifiers

PMID37954575
PMCPMC10632194
OpenAlexW4388541312

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.