Evidence map›Paper›PMID 37954374›Full record

ArticleHeliyon2023

Prediction of the interaction between

Wisnu Ananta Kusuma, Aulia Fadli, Rizka Fatriani, Fajar Sofyantoro, Donan Satria Yudha, Kenny Lischer, Tri Rini Nuringtyas, Wahyu Aristyaning Putri, Yekti Asih Purwestri, Respati Tri Swasono

Open access · goldAbstract read
In one paragraph

Article in Heliyon, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Wisnu Ananta KusumaDepartment of Computer Science, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia.
Aulia FadliDepartment of Computer Science, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia.
Rizka FatrianiTropical Biopharmaca Research Center, IPB University, Bogor, 16128, Indonesia.
Fajar SofyantoroFaculty of Biology, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Donan Satria YudhaFaculty of Biology, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Kenny LischerFaculty of Engineering, University of Indonesia, Jakarta, 16424, Indonesia.
Tri Rini NuringtyasFaculty of Biology, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Wahyu Aristyaning PutriFaculty of Biology, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Yekti Asih PurwestriFaculty of Biology, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Respati Tri SwasonoDepartment of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.
Universitas Gadjah Mada · IDIPB University · IDUniversity of Indonesia · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of peptide drugs to treat cancer is gaining popularity because of their efficacy, fewer side effects, and several advantages over other properties. Identifying the peptides that interact with cancer proteins is crucial in drug discovery. Several approaches related to predicting peptide-protein interactions have been conducted. However, problems arise due to the high costs of resources and time and the smaller number of studies. This study predicts peptide-protein interactions using Random Forest, XGBoost, and SAE-DNN. Feature extraction is also performed on proteins and peptides using intrinsic disorder, amino acid sequences, physicochemical properties, position-specific assessment matrices, amino acid composition, and dipeptide composition. Results show that all algorithms perform equally well in predicting interactions between peptides derived from venoms and target proteins associated with cancer. However, XGBoost produces the best results with accuracy, precision, and area under the receiver operating characteristic curve of 0.859, 0.663, and 0.697, respectively. The enrichment analysis revealed that peptides from the

Indexed as

BioinformaticsBiomedicalCancerDeep learningPeptideVenom

Identifiers

PMID37954374
PMCPMC10637925
OpenAlexW4388194623

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.