Evidence map›Paper›PMID 37953792›Full record

ArticlePeerJ2023

#DeOlhoNosCorais: a polygonal annotated dataset to optimize coral monitoring.

Daniel P Furtado, Edson A Vieira, Wildna Fernandes Nascimento, Kelly Y Inagaki, Jessica Bleuel, Marco Antonio Zanata Alves, Guilherme O Longo, Luiz S Oliveira

Abstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel P FurtadoDepartment of Informatics, Federal University of Paraná, Curitiba, PR, Brazil.
Edson A VieiraDepartment of Oceanography and Limnology, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Wildna Fernandes NascimentoDepartment of Oceanography and Limnology, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Kelly Y InagakiDepartment of Oceanography and Limnology, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Jessica BleuelDepartment of Oceanography and Limnology, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Marco Antonio Zanata AlvesDepartment of Informatics, Federal University of Paraná, Curitiba, PR, Brazil.
Guilherme O LongoDepartment of Oceanography and Limnology, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
Luiz S OliveiraDepartment of Informatics, Federal University of Paraná, Curitiba, PR, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corals are colonial animals within the Phylum Cnidaria that form coral reefs, playing a significant role in marine environments by providing habitat for fish, mollusks, crustaceans, sponges, algae, and other organisms. Global climate changes are causing more intense and frequent thermal stress events, leading to corals losing their color due to the disruption of a symbiotic relationship with photosynthetic endosymbionts. Given the importance of corals to the marine environment, monitoring coral reefs is critical to understanding their response to anthropogenic impacts. Most coral monitoring activities involve underwater photographs, which can be costly to generate on large spatial scales and require processing and analysis that may be time-consuming. The Marine Ecology Laboratory (LECOM) at the Federal University of Rio Grande do Norte (UFRN) developed the project "#DeOlhoNosCorais" which encourages users to post photos of coral reefs on their social media (Instagram) using this hashtag, enabling people without previous scientific training to contribute to coral monitoring. The laboratory team identifies the species and gathers information on coral health along the Brazilian coast by analyzing each picture posted on social media. To optimize this process, we conducted baseline experiments for image classification and semantic segmentation. We analyzed the classification results of three different machine learning models using the Local Interpretable Model-agnostic Explanations (LIME) algorithm. The best results were achieved by combining EfficientNet for feature extraction and Logistic Regression for classification. Regarding semantic segmentation, the U-Net Pix2Pix model produced a pixel-level accuracy of 86%. Our results indicate that this tool can enhance image selection for coral monitoring purposes and open several perspectives for improving classification performance. Furthermore, our findings can be expanded by incorporating other datasets to create a tool that streamlines the time and cost associated with analyzing coral reef images across various regions.

Indexed as

AnthozoaAnimalsCoral ReefsCrustaceaEcosystemFishesHumansComputer visionConvolutional neural networkMachine learningMarine ecology

Identifiers

PMID37953792
PMCPMC10634335

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.