Evidence map›Paper›PMID 37953645›Full record

ArticleRNA biology2023

Long non-coding RNA APDC plays important regulatory roles in metabolism of bone and adipose tissues.

Yao Liu, Zoe Xiaofang Zhu, Elissa K Zboinski, Wei Qiu, Junxiang Lian, Shibo Liu, Thomas E Van Dyke, Hans E Johansson, Qisheng Tu, En Luo and 1 more

Open access · goldAbstract read
In one paragraph

Article in RNA biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yao LiuState Key Laboratory of Oral Diseases & National Clinical Research Center for Oral Diseases & Department of Oral and Maxillofacial Surgery, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
Zoe Xiaofang ZhuDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.ORCID 0000-0001-8083-0212
Elissa K ZboinskiDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.
Wei QiuDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.
Junxiang LianDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.
Shibo LiuState Key Laboratory of Oral Diseases & National Clinical Research Center for Oral Diseases & Department of Oral and Maxillofacial Surgery, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
Thomas E Van DykeCenter for Clinical and Translational Research, The Forsyth Institute, Cambridge, MA, USA.
Hans E JohanssonResearch and Development, LGC Biosearch Technologies, Petaluma, CA, USA.
Qisheng TuDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.
En LuoState Key Laboratory of Oral Diseases & National Clinical Research Center for Oral Diseases & Department of Oral and Maxillofacial Surgery, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
Jake Jinkun ChenDivision of Oral Biology, Tufts University School of Dental Medicine, Boston, MA, USA.
Tufts University · USSichuan University · CNBiosearch Technologies (United States) · USHarvard University · US

Funding

Mechanisms of Resolvin E1 in Periodontal RegenerationR01DE025020 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI GUASTALDI, FERNANDO, VAN DYKE, THOMAS ELLIOTT · 2015 to 2023
$4.9M
Roles of Noncoding RNA in Bone RegenerationR01DE025681 · NIDCR · TUFTS UNIVERSITY BOSTON · PI CHEN, JAKE JINKUN · 2016 to 2024
$4.5M
A Long Noncoding RNA Amerliorates Periodontitis via Distinct Epigenetic PathwaysR01DE030074 · NIDCR · TUFTS UNIVERSITY BOSTON · PI CHEN, JAKE JINKUN · 2021 to 2025
$3.5M
Potentials of Epigenetic Molecules in Attenuating the Phenotypes of PeriodontitisR01DE032006 · NIDCR · TUFTS UNIVERSITY BOSTON · PI JAKE JINKUN CHEN · 2023 to 2026
$2.0M
NIDCR NIH HHS R01 DE025020NIDCR NIH HHS R01 DE025681NIDCR NIH HHS R01 DE030074NIDCR NIH HHS R01 DE032006
6 · The paper itself

Abstract

The long noncoding RNA (lncR) ANRIL in the human genome is an established genetic risk factor for atherosclerosis, periodontitis, diabetes, and cancer. However, the regulatory role of lncR-ANRIL in bone and adipose tissue metabolism remains unclear. To elucidate the function of lncRNA ANRIL in a mouse model, we investigated its ortholog, AK148321 (referred to as lncR-APDC), located on chr4 of the mouse genome, which is hypothesized to have similar biological functions to ANRIL. We initially revealed that lncR-APDC in mouse bone marrow cells (BMSCs) and lncR-ANRIL in human osteoblasts (hFOBs) are both increased during early osteogenesis. Subsequently, we examined the osteogenesis, adipogenesis, osteoclastogenesis function with lncR-APDC deletion/overexpression cell models. In vivo, we compared the phenotypic differences in bone and adipose tissue between APDC-KO and wild-type mice. Our findings demonstrated that lncR-APDC deficiency impaired osteogenesis while promoting adipogenesis and osteoclastogenesis. Conversely, the overexpression of lncR-APDC stimulated osteogenesis, but impaired adipogenesis and osteoclastogenesis. Furthermore, KDM6B was downregulated with lncR-APDC deficiency and upregulated with overexpression. Through binding-site analysis, we identified miR-99a as a potential target of lncR-APDC. The results suggest that lncR-APDC exerts its osteogenic function via miR-99a/KDM6B/Hox pathways. Additionally, osteoclasto-osteogenic imbalance was mediated by lncR-APDC through MAPK/p38 and TLR4/MyD88 activation. These findings highlight the pivotal role of lncR-APDC as a key regulator in bone and fat tissue metabolism. It shows potential therapeutic for addressing imbalances in osteogenesis, adipogenesis, and osteoclastogenesis.

Indexed as

MicroRNAsRNA, Long NoncodingAdipose TissueAnimalsBone and BonesHumansJumonji Domain-Containing Histone DemethylasesMiceOsteogenesisJumonji Domain-Containing Histone DemethylasesKDM6B protein, humanMicroRNAsRNA, Long Noncodingbone metabolismcells of bones-osteoblasts & osteoclasts & BMSCsepigeneticsgenetic animal modelsLong non-coding RNAmolecular pathways-remodelling

Identifiers

PMID37953645
PMCPMC10653663
OpenAlexW4388634840

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.