Evidence map›Paper›PMID 37952769›Full record

ArticleJournal of molecular biology2023

Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery.

Stephano M Iglesias, Ravi K Lokareddy, Ruoyu Yang, Fenglin Li, Daniel P Yeggoni, Chun-Feng David Hou, Makayla N Leroux, Juliana R Cortines, Justin C Leavitt, Mary Bird and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. mBio · 2026
    Article
  7. Computational and structural biotechnology journal · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Integrative structural analysis ofResearch square · 2024
    Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Stephano M IglesiasDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA.
Ravi K LokareddyDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, 1825 University Blvd, Birmingham, AL 35294, USA.
Ruoyu YangDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA.
Fenglin LiDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA.
Daniel P YeggoniDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA.
Chun-Feng David HouDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA.
Makayla N LerouxDepartment of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA.
Juliana R CortinesDepartment of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA; Departamento de Virologia, Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21590-902, Brazil.
Justin C LeavittSchool of Biological Sciences, University of Utah, Salt Lake City, UT 84112, USA.
Mary BirdDepartment of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA.
Sherwood R CasjensSchool of Biological Sciences, University of Utah, Salt Lake City, UT 84112, USA.
Simon WhiteDepartment of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA.
Carolyn M TeschkeDepartment of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA; Department of Chemistry, University of Connecticut, 91 N. Eagleville Road, Storrs, CT 06269, USA.
Gino CingolaniDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locus Street, Philadelphia, PA 19107, USA; Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, 1825 University Blvd, Birmingham, AL 35294, USA. Electronic address: gcingola@uab.edu.
Thomas Jefferson University · USUniversity of Connecticut · USUniversity of Utah · USUniversidade Federal do Rio de Janeiro · BRUniversity of Alabama at Birmingham · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
Understanding the Protein:Protein Interactions Required for Virus AssemblyR01GM076661 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI TESCHKE, CAROLYN M · 2007 to 2022
$7.2M
Mechanism of Viral Genome Delivery into CellsR35GM140733 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CINGOLANI, GINO · 2021 to 2025
$2.8M
Multisubunit viral ATPases that couple ATP-hydrolysis to genome translocationR01GM100888 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2012 to 2020
$2.5M
A New Cryo-Transmission Electron Microscope at Thomas Jefferson UniversityS10OD030457 · OD · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2022 to 2022
$2.0M
DNA packaging and delivery by dsDNA virusesR01GM114817 · NIGMS · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2014 to 2017
$1.5M
A Field Study Examining the Effects of Alcohol, Bar Environment & Beliefs on Sexual Misperception, a Precursor to Sexual AggressionF31AA030457 · NIAAA · UNIVERSITY OF WASHINGTON · PI SMITH, LAUREN MICHELLE · 2022 to 2024
$143k
Investigating the conformational changes of the portal protein that drive DNA packaging in a dsDNA virusF31GM147952 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI LEROUX, MAKAYLA · 2023 to 2024
$92k
NCI NIH HHS P30 CA056036NIAAA NIH HHS F31 AA030457NIGMS NIH HHS F31 GM147952NIGMS NIH HHS R01 GM076661NIGMS NIH HHS R01 GM100888NIGMS NIH HHS R01 GM114817NIGMS NIH HHS R35 GM140733NIGMS NIH HHS U24 GM129547NIH HHS S10 OD030457
6 · The paper itself

Abstract

Bacteriophage P22 is a prototypical member of the Podoviridae superfamily. Since its discovery in 1952, P22 has become a paradigm for phage transduction and a model for icosahedral viral capsid assembly. Here, we describe the complete architecture of the P22 tail apparatus (gp1, gp4, gp10, gp9, and gp26) and the potential location and organization of P22 ejection proteins (gp7, gp20, and gp16), determined using cryo-EM localized reconstruction, genetic knockouts, and biochemical analysis. We found that the tail apparatus exists in two equivalent conformations, rotated by ∼6° relative to the capsid. Portal protomers make unique contacts with coat subunits in both conformations, explaining the 12:5 symmetry mismatch. The tail assembles around the hexameric tail hub (gp10), which folds into an interrupted β-propeller characterized by an apical insertion domain. The tail hub connects proximally to the dodecameric portal protein and head-to-tail adapter (gp4), distally to the trimeric tail needle (gp26), and laterally to six trimeric tailspikes (gp9) that attach asymmetrically to gp10 insertion domain. Cryo-EM analysis of P22 mutants lacking the ejection proteins gp7 or gp20 and biochemical analysis of purified recombinant proteins suggest that gp7 and gp20 form a molecular complex associated with the tail apparatus via the portal protein barrel. We identified a putative signal transduction pathway from the tailspike to the tail needle, mediated by three flexible loops in the tail hub, that explains how lipopolysaccharide (LPS) is sufficient to trigger the ejection of the P22 DNA in vitro.

Indexed as

Bacteriophage P22Salmonella typhimuriumCapsid ProteinsGuanidinesPiperazinesViral Tail ProteinsCapsid ProteinsGP 4GuanidinesPiperazinesViral Tail Proteinsbacteriophage P22DNA-ejectosomeejection proteinsSalmonella-phagesviral genome ejection

Identifiers

PMID37952769
PMCPMC10842050
OpenAlexW4388563712

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.