Evidence map›Paper›PMID 37951215›Full record

ArticleMolecular cell2023

K6-linked ubiquitylation marks formaldehyde-induced RNA-protein crosslinks for resolution.

Aldwin Suryo Rahmanto, Christian J Blum, Claudia Scalera, Jan B Heidelberger, Mikhail Mesitov, Daniel Horn-Ghetko, Justus F Gräf, Ivan Mikicic, Rebecca Hobrecht, Anna Orekhova and 14 more

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Quality control and signaling pathways at stalled ribosomes.Experimental & molecular medicine · 2026
    Review
  11. Article
  12. E2 variants for probing E3 ubiquitin ligase activities.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 2 countries.

Aldwin Suryo RahmantoInstitute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität, 55128 Mainz, Germany.
Christian J BlumInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Claudia ScaleraInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Jan B HeidelbergerInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Mikhail MesitovInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Daniel Horn-GhetkoDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany.
Justus F GräfInstitute of Molecular Biology (IMB), 55128 Mainz, Germany; Department of Proteomics, The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.
Ivan MikicicInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Rebecca HobrechtInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Anna OrekhovaInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Matthias OstermaierInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Stefanie EbersbergerInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Martin M MöckelInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Nils KrapothInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Nádia Da Silva FernandesInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Athanasia MiziInstitute of Pathology, University Medical Center Göttingen, 37075 Göttingen, Germany.
Yajie ZhuInstitute of Pathology, University Medical Center Göttingen, 37075 Göttingen, Germany.
Jia-Xuan ChenInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Chunaram ChoudharyDepartment of Proteomics, The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.
Argyris PapantonisInstitute of Pathology, University Medical Center Göttingen, 37075 Göttingen, Germany.
Helle D UlrichInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Brenda A SchulmanDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany.
Julian KönigInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Petra BeliInstitute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität, 55128 Mainz, Germany. Electronic address: p.beli@imb-mainz.de.
Institute of Molecular Biology · DEUniversitätsmedizin Göttingen · DEJohannes Gutenberg University Mainz · DEMax Planck Institute of Biochemistry · DEUniversity of Copenhagen · DK

Funding

European Research Council
6 · The paper itself

Abstract

Reactive aldehydes are produced by normal cellular metabolism or after alcohol consumption, and they accumulate in human tissues if aldehyde clearance mechanisms are impaired. Their toxicity has been attributed to the damage they cause to genomic DNA and the subsequent inhibition of transcription and replication. However, whether interference with other cellular processes contributes to aldehyde toxicity has not been investigated. We demonstrate that formaldehyde induces RNA-protein crosslinks (RPCs) that stall the ribosome and inhibit translation in human cells. RPCs in the messenger RNA (mRNA) are recognized by the translating ribosomes, marked by atypical K6-linked ubiquitylation catalyzed by the RING-in-between-RING (RBR) E3 ligase RNF14, and subsequently resolved by the ubiquitin- and ATP-dependent unfoldase VCP. Our findings uncover an evolutionary conserved formaldehyde-induced stress response pathway that protects cells against RPC accumulation in the cytoplasm, and they suggest that RPCs contribute to the cellular and tissue toxicity of reactive aldehydes.

Indexed as

RNAUbiquitin-Protein LigasesAldehydesFormaldehydeHumansRNA, MessengerUbiquitinationAldehydesFormaldehydeRNARNA, MessengerUbiquitin-Protein LigasesK6-linked ubiquitylationquantitative proteomicsreactive aldehydesribosomeRNA-protein crosslinksRNF14translationVCP

Identifiers

PMID37951215
OpenAlexW4388550885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.