Evidence map›Paper›PMID 37950866›Full record

ArticleCell reports2023

Self-reversal facilitates the resolution of HMCES DNA-protein crosslinks in cells.

Jorge Rua-Fernandez, Courtney A Lovejoy, Kavi P M Mehta, Katherine A Paulin, Yasmine T Toudji, Celeste Giansanti, Brandt F Eichman, David Cortez

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jorge Rua-FernandezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Courtney A LovejoyDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Kavi P M MehtaDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Katherine A PaulinDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
Yasmine T ToudjiDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Celeste GiansantiDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Brandt F EichmanDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.
David CortezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA. Electronic address: david.cortez@vanderbilt.edu.
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
The DNA replication-repair interface: mechanisms and regulationR35GM136401 · NIGMS · VANDERBILT UNIVERSITY · PI Brandt F Eichman · 2020 to 2026
$4.3M
Functions of SRAP domain proteins in DNA metabolismR01ES030575 · NIEHS · VANDERBILT UNIVERSITY · PI David K Cortez · 2019 to 2026
$3.9M
The mutagenic consequences of replication-coupled DNA repair mechanismsR00ES034058 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI MEHTA, KAVI · 2023 to 2025
$747k
The mutagenic consequences of replication-coupled DNA repair mechanismsK99ES034058 · NIEHS · VANDERBILT UNIVERSITY · PI MEHTA, KAVI · 2022 to 2022
$102k
The molecular basis of SRAP domain DNA-protein crosslinkingF31ES032334 · NIEHS · VANDERBILT UNIVERSITY · PI PAULIN, KATHERINE AMIDON · 2020 to 2021
$60k
NCI NIH HHS P30 CA068485NIEHS NIH HHS F31 ES032334NIEHS NIH HHS K99 ES034058NIEHS NIH HHS R00 ES034058NIEHS NIH HHS R01 ES030575NIGMS NIH HHS R35 GM136401
6 · The paper itself

Abstract

Abasic sites are common DNA lesions stalling polymerases and threatening genome stability. When located in single-stranded DNA (ssDNA), they are shielded from aberrant processing by 5-hydroxymethyl cytosine, embryonic stem cell (ESC)-specific (HMCES) via a DNA-protein crosslink (DPC) that prevents double-strand breaks. Nevertheless, HMCES-DPCs must be removed to complete DNA repair. Here, we find that DNA polymerase α inhibition generates ssDNA abasic sites and HMCES-DPCs. These DPCs are resolved with a half-life of approximately 1.5 h. HMCES can catalyze its own DPC self-reversal reaction, which is dependent on glutamate 127 and is favored when the ssDNA is converted to duplex DNA. When the self-reversal mechanism is inactivated in cells, HMCES-DPC removal is delayed, cell proliferation is slowed, and cells become hypersensitive to DNA damage agents that increase AP (apurinic/apyrimidinic) site formation. In these circumstances, proteolysis may become an important mechanism of HMCES-DPC resolution. Thus, HMCES-DPC formation followed by self-reversal is an important mechanism for ssDNA AP site management.

Indexed as

DNA DamageProteinsDNADNA RepairDNA ReplicationDNA, Single-StrandedDNADNA, Single-StrandedProteinsabasic sitebase excision repairCP: Molecular biologyDNA damagereplication stressSPRTNSRAP

Identifiers

PMID37950866
PMCPMC10842721
OpenAlexW4388583260

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.