Evidence map›Paper›PMID 37948379›Full record

ArticlePloS one2023

Exploring multisite heterogeneity of human basal cell carcinoma proteome and transcriptome.

Ariel Berl, Ofir Shir-Az, Ilai Genish, Hadas Biran, Din Mann, Amrita Singh, Julia Wise, Vladimir Kravtsov, Debora Kidron, Alexander Golberg and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ariel BerlDepartment of Plastic Surgery, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0003-3705-5454
Ofir Shir-AzDepartment of Plastic Surgery, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Ilai GenishEfi Arazi School of Computer Science, Reichman University, Herzliya, Israel.
Hadas BiranDepartment of Computer Science, Technion - Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-1739-1170
Din MannDepartment of Plastic Surgery, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Amrita SinghDepartment of Environmental Studies, Porter School of Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel.
Julia WiseDepartment of Environmental Studies, Porter School of Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel.
Vladimir KravtsovDepartment of Pathology, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Debora KidronDepartment of Pathology, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Alexander GolbergDepartment of Environmental Studies, Porter School of Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0001-8782-8879
Edward VitkinEfi Arazi School of Computer Science, Reichman University, Herzliya, Israel.ORCID 0000-0003-4055-4772
Zohar YakhiniEfi Arazi School of Computer Science, Reichman University, Herzliya, Israel.
Avshalom ShalomDepartment of Plastic Surgery, Meir Medical Center, Kfar Sava, Israel, Affiliated with the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Tel Aviv University · ILTechnion – Israel Institute of Technology · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Basal cell carcinoma (BCC) is the most common type of skin cancer. Due to multiple, potential underlying molecular tumor aberrations, clinical treatment protocols are not well-defined. This study presents multisite molecular heterogeneity profiles of human BCC based on RNA and proteome profiling. Three areas from lesions excised from 9 patients were analyzed. The focus was gene expression profiles based on proteome and RNA measurements of intra-tumor heterogeneity from the same patient and inter-tumor heterogeneity in nodular, infiltrative, and superficial BCC tumor subtypes from different patients. We observed significant overlap in intra- and inter-tumor variability of proteome and RNA expression profiles, showing significant multisite heterogeneity of protein expression in the BCC tumors. Inter-subtype analysis has also identified unique proteins for each BCC subtype. This profiling leads to a deeper understanding of BCC molecular heterogeneity and potentially contributes to developing new sampling tools for personalized diagnostics therapeutic approaches to BCC.

Indexed as

Basal Cell CarcinomaSkin NeoplasmsHumansProteomeRNATranscriptomeProteomeRNA

Identifiers

PMID37948379
PMCPMC10637653
OpenAlexW4388576191

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.