Evidence map›Paper›PMID 37948126›Full record

ArticleThe Journal of cell biology2024

Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria-ER contacts.

Ben Cardoen, Kurt R Vandevoorde, Guang Gao, Milene Ortiz-Silva, Parsa Alan, William Liu, Ellie Tiliakou, A Wayne Vogl, Ghassan Hamarneh, Ivan R Nabi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Cytochrome bAging cell · 2024
    Article
  14. Imaging interorganelle contacts at a glance.Journal of cell science · 2024
    Review
  15. Review
  16. Article
  17. Imaging and proteomics toolkits for studying organelle contact sites.Frontiers in cell and developmental biology · 2024
    Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Ben Cardoen *School of Computing Science, Simon Fraser University , Burnaby, Canada.ORCID 0000-0001-6871-1165
Kurt R Vandevoorde *Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0009-0001-4630-5067
Guang Gao *Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0001-7523-2234
Milene Ortiz-Silva *Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0002-1066-6100
Parsa AlanDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0009-0006-5169-0437
William LiuDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0001-8515-5295
Ellie TiliakouDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0003-2153-0652
A Wayne VoglDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0001-7694-7602
Ghassan Hamarneh *School of Computing Science, Simon Fraser University , Burnaby, Canada.ORCID 0000-0001-5040-7448
Ivan R Nabi *Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0002-0670-0513
University of British Columbia · CASimon Fraser University · CA

Funding

CIHR AWD-022443CIHR COP-137359CIHR COP-143083CIHR PJT-148698
6 · The paper itself

Abstract

Identification and morphological analysis of mitochondria-ER contacts (MERCs) by fluorescent microscopy is limited by subpixel resolution interorganelle distances. Here, the membrane contact site (MCS) detection algorithm, MCS-DETECT, reconstructs subpixel resolution MERCs from 3D super-resolution image volumes. MCS-DETECT shows that elongated ribosome-studded riboMERCs, present in HT-1080 but not COS-7 cells, are morphologically distinct from smaller smooth contacts and larger contacts induced by mitochondria-ER linker expression in COS-7 cells. RiboMERC formation is associated with increased mitochondrial potential, reduced in Gp78 knockout HT-1080 cells and induced by Gp78 ubiquitin ligase activity in COS-7 and HeLa cells. Knockdown of riboMERC tether RRBP1 eliminates riboMERCs in both wild-type and Gp78 knockout HT-1080 cells. By MCS-DETECT, Gp78-dependent riboMERCs present complex tubular shapes that intercalate between and contact multiple mitochondria. MCS-DETECT of 3D whole-cell super-resolution image volumes, therefore, identifies novel dual control of tubular riboMERCs, whose formation is dependent on RRBP1 and size modulated by Gp78 E3 ubiquitin ligase activity.

Indexed as

Endoplasmic ReticulumMitochondrial MembranesAnimalsChlorocebus aethiopsCOS CellsHeLa CellsHumansMitochondriaRibosomesUbiquitinationUbiquitin-Protein LigasesUbiquitin-Protein Ligases

Identifiers

PMID37948126
PMCPMC10638097
OpenAlexW4388565585

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.