Evidence map›Paper›PMID 37947644›Full record

ArticleCells2023

The Small GTPase Rab7 Regulates Antigen Processing in B Cells in a Possible Interplay with Autophagy Machinery.

Marika Runsala, Elina Kuokkanen, Eveliina Uski, Vid Šuštar, Meryem Özge Balci, Johanna Rajala, Vilma Paavola, Pieta K Mattila

Open access · goldAbstract read
In one paragraph

Article in Cells, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Marika RunsalaInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Elina KuokkanenInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Eveliina UskiInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Vid ŠuštarInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Meryem Özge BalciInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Johanna RajalaInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Vilma PaavolaInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.
Pieta K MattilaInstitute of Biomedicine, and MediCity Research Laboratories, University of Turku, 20014 Turku, Finland.ORCID 0000-0003-2805-0686
University of Turku · FIÅbo Akademi University · FI

Funding

Erasmus+Finnish Cultural FoundationJane ja Aatos Erkon säätiöPaulo FoundationResearch Council of Finland 257000Research Council of Finland 286712Research Council of Finland 296684Research Council of Finland 307313Research Council of Finland 327378Research Council of Finland 339810Sigrid Jusélius Foundation
6 · The paper itself

Abstract

In B cells, antigen processing and peptide-antigen (pAg) presentation is essential to ignite high-affinity antibody responses with the help of cognate T cells. B cells efficiently internalize and direct specific antigens for processing and loading onto MHCII. This critical step, which enables pAg presentation, occurs in MHCII compartments (MIICs) which possess the enzymatic machinery for pAg loading on MHCII. The intracellular transport systems that guide antigen and maintain this unique compartment remain enigmatic. Here, we probed the possible functional role of two known endosomal proteins, the Rab family small GTPases Rab7 and Rab9, that are both reported to colocalize with internalized antigen. As compared to Rab9, we found Rab7 to exhibit a higher overlap with antigen and MIIC components. Rab7 also showed a higher association with antigen degradation. The inhibition of Rab7 drastically decreased pAg presentation. Additionally, we detected the strong colocalization of perinuclearly clustered and presumably MIIC-associated antigen with autophagy protein LC3. When we pharmacologically inhibited autophagy, pAg presentation was inhibited. Together, our data promote Rab7 as an important regulator of antigen processing and, considering the previously reported functions of Rab7 in autophagy, this also raises the possibility of the involvement of autophagy-related machinery in this process.

Indexed as

Antigen Presentationrab7 GTP-Binding ProteinsAutophagyB-Lymphocytesrab GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab GTP-Binding Proteinsadaptive immune systemantigen processingautophagyB cell activationB cell receptorBCRendosomeslysosomesMHCIIRab7vesicle traffic

Identifiers

PMID37947644
PMCPMC10649364
OpenAlexW4388296652

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.