Evidence map›Paper›PMID 37947354›Full record

ArticleOrganic & biomolecular chemistry2023

The linkage-type and the exchange molecule affect the protein-labeling efficiency of iminoboronate probes.

Antonie J van der Zouwen, Aike Jeucken, Elske van der Pol, Gerben Boerema, Dirk J Slotboom, Martin D Witte

Abstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Antonie J van der ZouwenChemical Biology II, Stratingh Institute for Chemistry, Nijenborgh 7, 9747 AG, Groningen, The Netherlands. m.d.witte@rug.nl.ORCID 0000-0002-1596-406X
Aike JeuckenMembrane Enzymology, Groningen Biomolecular Sciences and Biotechnology Institute, 9747 AG Groningen, The Netherlands.ORCID 0000-0001-6082-8617
Elske van der PolChemical Biology II, Stratingh Institute for Chemistry, Nijenborgh 7, 9747 AG, Groningen, The Netherlands. m.d.witte@rug.nl.
Gerben BoeremaChemical Biology II, Stratingh Institute for Chemistry, Nijenborgh 7, 9747 AG, Groningen, The Netherlands. m.d.witte@rug.nl.
Dirk J SlotboomMembrane Enzymology, Groningen Biomolecular Sciences and Biotechnology Institute, 9747 AG Groningen, The Netherlands.ORCID 0000-0002-5804-9689
Martin D WitteChemical Biology II, Stratingh Institute for Chemistry, Nijenborgh 7, 9747 AG, Groningen, The Netherlands. m.d.witte@rug.nl.ORCID 0000-0003-4660-2974

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reversible bioorthogonal conjugation reactions have been exploited in the chemoproteomic field to prepare protein labeling reagents and to visualize labeled proteins. We recently demonstrated that reversible iminoboronates can be used to prepare probes from fragment libraries and that the linkage subsequently can be used to detect the labeled proteins. In this study, we determined the effect of the stability of the iminoboronate linkage on the efficiency of the labeling protocol. Our study reveals that the linkage should be stable enough to allow for efficient targeting, but should be labile enough to detect the labeled protein. Acyl hydrazides were identified as the most suitable handles for the probe synthesis step. Anthranilic hydrazides and

Indexed as

Molecular ProbesProteinsMolecular ProbesProteins

Identifiers

PMID37947354
PMCPMC10686633

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.