Evidence map›Paper›PMID 37945741›Full record

ArticleNature structural & molecular biology2023

The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.

Julian R Braxton, Chad R Altobelli, Maxwell R Tucker, Eric Tse, Aye C Thwin, Michelle R Arkin, Daniel R Southworth

Open access · hybridAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. SNARE disassembly requires Sec18/NSF side loading.Nature structural & molecular biology · 2025
    Article
  4. Review
  5. SNARE disassembly requires Sec18/NSF side-loading.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Allosteric activation of VCP, an AAA unfoldase, by small molecule mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Julian R BraxtonGraduate Program in Chemistry and Chemical Biology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-1170-5140
Chad R AltobelliGraduate Program in Chemistry and Chemical Biology, University of California San Francisco, San Francisco, CA, USA.
Maxwell R TuckerDepartment of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-1606-8806
Eric TseDepartment of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-2082-9006
Aye C ThwinDepartment of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA.
Michelle R ArkinDepartment of Pharmaceutical Chemistry and Small Molecule Discovery Center, University of California San Francisco, San Francisco, CA, USA. michelle.arkin@ucsf.edu.ORCID 0000-0002-9366-6770
Daniel R SouthworthDepartment of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California San Francisco, San Francisco, CA, USA. daniel.southworth@ucsf.edu.ORCID 0000-0001-7108-9389
University of California, San Francisco · USCalifornia Institute of Technology · US

Funding

Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Mechanisms of Protein Disaggregation and Turnover by AAA+ ChaperonesR01GM138690 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SOUTHWORTH, DANIEL RYLAND · 2021 to 2024
$1.9M
Molecular Biophysics Training GrantT32GM149436 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aashish Manglik · 2023 to 2026
$1.6M
Protein and small-molecule tools to probe the conformational dependence of the VCP/p97 protein-protein interaction network--Equipment SupplementR01GM130145 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARKIN, MICHELLE · 2018 to 2021
$1.6M
Structure and function of mitochondrial Hsp60F31GM142279 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRAXTON, JULIAN · 2021 to 2023
$90k
NIGMS NIH HHS F31 GM142279NIGMS NIH HHS R01 GM130145NIGMS NIH HHS R01 GM138690NIGMS NIH HHS T32 GM145460NIGMS NIH HHS T32 GM149436
6 · The paper itself

Abstract

p97, also known as valosin-containing protein, is an essential cytosolic AAA+ (ATPases associated with diverse cellular activities) hexamer that unfolds substrate polypeptides to support protein homeostasis and macromolecular disassembly. Distinct sets of p97 adaptors guide cellular functions but their roles in direct control of the hexamer are unclear. The UBXD1 adaptor localizes with p97 in critical mitochondria and lysosome clearance pathways and contains multiple p97-interacting domains. Here we identify UBXD1 as a potent p97 ATPase inhibitor and report structures of intact human p97-UBXD1 complexes that reveal extensive UBXD1 contacts across p97 and an asymmetric remodeling of the hexamer. Conserved VIM, UBX and PUB domains tether adjacent protomers while a connecting strand forms an N-terminal domain lariat with a helix wedged at the interprotomer interface. An additional VIM-connecting helix binds along the second (D2) AAA+ domain. Together, these contacts split the hexamer into a ring-open conformation. Structures, mutagenesis and comparisons to other adaptors further reveal how adaptors containing conserved p97-remodeling motifs regulate p97 ATPase activity and structure.

Indexed as

Cell Cycle ProteinsHumansProtein BindingProtein Structure, TertiaryValosin Containing ProteinCell Cycle ProteinsValosin Containing ProteinVCP protein, human

Identifiers

PMID37945741
PMCPMC10716044
OpenAlexW4388540922

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.