Evidence map›Paper›PMID 37943888›Full record

ArticlePloS one2023

Functionally similar genes exhibit comparable/similar time-course expression kinetics in the UV-induced photoaged mouse model.

Seon-Pil Jin, Joong Heon Suh, Chang-Eop Kim, Inn Gyung Oh, Eun Young Seo, Min-Kyoung Kim, Kyeong-No Yoon, Jin Ho Chung

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Seon-Pil JinDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.ORCID 0000-0002-8290-4278
Joong Heon SuhDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.ORCID 0000-0002-1046-0487
Chang-Eop KimDepartment of Physiology, Department of Physiology, Gachon University College of Korean Medicine, Seongnam, Republic of Korea.
Inn Gyung OhDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.
Eun Young SeoDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.
Min-Kyoung KimDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.
Kyeong-No YoonDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.ORCID 0000-0003-3447-5824
Jin Ho ChungDepartment of Dermatology, Seoul National University Hospital, Seoul, Republic of Korea.ORCID 0000-0002-0582-6392
Seoul National University · KRGachon University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Skin photoaging induced by ultraviolet (UV) irradiation contributes to the formation of thick and coarse wrinkles. Humans are exposed to UV light throughout their lives. Therefore, it is crucial to determine the time-sequential effects of UV on the skin. In this study, we irradiated the mouse back skin with UV light for eight weeks and observed the changes in gene expressions via microarray analysis every week. There were more downregulated genes (514) than upregulated genes (123). The downregulated genes had more functional diversity than the upregulated genes. Additionally, the number of downregulated genes did not increase in a time-dependent manner. Instead, time-dependent kinetic patterns were observed. Interestingly, each kinetic cluster harbored functionally enriched gene sets. Since collagen changes in the dermis are considered to be a major cause of photoaging, we hypothesized that other gene sets contributing to photoaging would exhibit kinetics similar to those of the collagen-regulatory genes identified in this study. Accordingly, co-expression network analysis was conducted using 11 well-known collagen-regulatory seed genes to predict genes with similar kinetics. We ranked all downregulated genes from 1 to 504 based on their expression levels, and the top 50 genes were suggested to be involved in the photoaging process. Additionally, to validate and support our identified top 50 gene lists, we demonstrated that the genes (FN1, CCDC80, PRELP, and TGFBR3) we discovered are downregulated by UV irradiation in cultured human fibroblasts, leading to decreased collagen levels, which is indicative of photoaging processes. Overall, this study demonstrated the time-sequential genetic changes in chronically UV-irradiated skin and proposed 50 genes that are involved in the mechanisms of photoaging.

Indexed as

SkinSkin AgingAnimalsCollagenFibroblastsHumansMiceUltraviolet RaysCollagen

Identifiers

PMID37943888
PMCPMC10635544
OpenAlexW4388521759

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.