Evidence map›Paper›PMID 37942321›Full record

ArticleFrontiers in immunology2023

Heterozygote advantage at HLA class I and II loci and reduced risk of colorectal cancer.

Ya-Yu Tsai, Chenxu Qu, Joseph D Bonner, Rebeca Sanz-Pamplona, Sidney S Lindsey, Marilena Melas, Kevin J McDonnell, Gregory E Idos, Christopher P Walker, Kevin K Tsang and 10 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Ya-Yu TsaiGenomic Medicine Institute, Cleveland Clinic, Cleveland, OH, United States.
Chenxu QuNorris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, United States.
Joseph D BonnerCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Rebeca Sanz-PamplonaCatalan Institute of Oncology (ICO), Hospitalet de Llobregat, Barcelona, Spain.
Sidney S LindseyCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Marilena MelasMolecular Diagnostics, New York Genome Center, New York, NY, United States.
Kevin J McDonnellCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Gregory E IdosCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Christopher P WalkerCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Kevin K TsangCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Diane M Da SilvaNorris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, United States.
Ferran Moratalla-NavarroCatalan Institute of Oncology (ICO), Hospitalet de Llobregat, Barcelona, Spain.
Asaf MaozDepartment of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, United States.
Hedy S RennertB. Rappaport Faculty of Medicine, Technion and the Association for Promotion of Research in Precision Medicine (APRPM), Haifa, Israel.
W Martin KastNorris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, United States.
Joel K GreensonDepartment of Pathology, University of Michigan, Ann Arbor, MI, United States.
Victor MorenoCatalan Institute of Oncology (ICO), Hospitalet de Llobregat, Barcelona, Spain.
Gad RennertB. Rappaport Faculty of Medicine, Technion and the Association for Promotion of Research in Precision Medicine (APRPM), Haifa, Israel.
Stephen B GruberCenter for Precision Medicine, City of Hope National Medical Center, Duarte, CA, United States.
Stephanie L SchmitGenomic Medicine Institute, Cleveland Clinic, Cleveland, OH, United States.
City Of Hope National Medical Center · USUniversity of Southern California · USCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESCleveland Clinic · USHarvard University · USInstitut Català d'Oncologia · ESNew York Genome Center · USUniversity of Michigan · US

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MYLES G COCKBURN · 1985 to 2026
$181.4M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
MOLECULAR EPIDEMIOLOGY OF COLORECTAL CANCERR01CA081488 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GRUBER, STEPHEN B · 1999 to 2008
$9.2M
Integration of epidemiology, pathology, immunology and outcomes in colorectal cancerR01CA263318 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI STEPHEN B GRUBER · 2022 to 2026
$3.4M
The Epidemiology of Immune Responses in Colorectal CancerR01CA197350 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GRUBER, STEPHEN B · 2015 to 2019
$3.2M
NCI NIH HHS P30 CA014089NCI NIH HHS R01 CA081488NCI NIH HHS R01 CA197350NCI NIH HHS R01 CA263318NCI NIH HHS T32 CA009172
6 · The paper itself

Abstract

Objective: Reduced diversity at Human Leukocyte Antigen (HLA) loci may adversely affect the host's ability to recognize tumor neoantigens and subsequently increase disease burden. We hypothesized that increased heterozygosity at HLA loci is associated with a reduced risk of developing colorectal cancer (CRC). Methods: We imputed HLA class I and II four-digit alleles using genotype data from a population-based study of 5,406 cases and 4,635 controls from the Molecular Epidemiology of Colorectal Cancer Study (MECC). Heterozygosity at each HLA locus and the number of heterozygous genotypes at HLA class -I ( Results: Individuals with all heterozygous genotypes at all three class I genes had a reduced odds of CRC (OR: 0.74; 95% CI: 0.56-0.97, Conclusion: Our findings support a heterozygote advantage for the HLA class-I and -II loci, indicating an important role for HLA genetic variability in the etiology of CRC.

Indexed as

Colorectal NeoplasmsHistocompatibility Antigens Class IGene FrequencyHeterozygoteHistocompatibility Antigens Class IIHLA AntigensHumansReceptors, Antigen, T-CellHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensReceptors, Antigen, T-Cellcolorectal cancerheterozygosityheterozygote advantageHLA diversityhuman leukocyte antigen

Identifiers

PMID37942321
PMCPMC10627840
OpenAlexW4387903925

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.