ArticleNucleic acids research2024
SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data.
Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Silk_40K SNP array facilitates the genomic prediction of complex traits in silkworm (Bombyx mori).Journal of advanced research · 2026Article
- Pan-Transcriptome Analyses of Multiple Tissues and Growth Stages Create Expression Atlases for the SilkwormAnimals : an open access journal from MDPI · 2026Article
- InsectBase 3.0: a comprehensive multi-omics resource for insects.Nucleic acids research · 2026Article
- Dosage-dependent regulation of embryonic diapause by sorbitol dehydrogenase in the silkworm, Bombyx mori.PLoS genetics · 2025Article
- Overexpression of LIM Homeodomain GeneBiology · 2025Article
- Article
- Characterization of Spectrin Family Genes and Their Evolutionary Roles in Domestication and Breeding of the SilkwormInsects · 2025Article
- Telomere-to-telomere genome assemblies of three silkworm strains with long-term pupal characteristics.Scientific data · 2025Article
- Genome-wide association study of cocoon-producing traits in four Henan silkworm strains revealed new candidate genes.Frontiers in genetics · 2025Article
- The BTB-ZF geneeLife · 2024Article
- The Spatio-Temporal Expression Profiles of Silkworm Pseudogenes Provide Valuable Insights into Their Biological Roles.Evolutionary bioinformatics online · 2024Article
Corrections and comments
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Authors and funding
19 authors.
Funding
Abstract
The silkworm Bombyx mori is a domesticated insect that serves as an animal model for research and agriculture. The silkworm super-pan-genome dataset, which we published last year, is a unique resource for the study of global genomic diversity and phenotype-genotype association. Here we present SilkMeta (http://silkmeta.org.cn), a comprehensive database covering the available silkworm pan-genome and multi-omics data. The database contains 1082 short-read genomes, 546 long-read assembled genomes, 1168 transcriptomes, 294 phenotype characterizations (phenome), tens of millions of variations (variome), 7253 long non-coding RNAs (lncRNAs), 18 717 full length transcripts and a set of population statistics. We have compiled publications on functional genomics research and genetic stock deciphering (mutant map). A range of bioinformatics tools is also provided for data visualization and retrieval. The large batch of omics data and tools were integrated in twelve functional modules that provide useful strategies and data for comparative and functional genomics research. The interactive bioinformatics platform SilkMeta will benefit not only the silkworm but also the insect biology communities.
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Registered trials
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