Evidence map›Paper›PMID 37941138›Full record

ArticleNucleic acids research2024

WikiPathways 2024: next generation pathway database.

Ayushi Agrawal, Hasan Balcı, Kristina Hanspers, Susan L Coort, Marvin Martens, Denise N Slenter, Friederike Ehrhart, Daniela Digles, Andra Waagmeester, Isabel Wassink and 12 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 299 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
299citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

299 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
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239 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Ayushi AgrawalData Science and Biotechnology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID 0000-0003-2940-8926
Hasan BalcıMaastricht Centre for Systems Biology (MaCSBio), Maastricht University, The Netherlands.ORCID 0000-0001-8319-7758
Kristina HanspersData Science and Biotechnology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID 0000-0001-5410-599X
Susan L CoortDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0003-1224-9690
Marvin MartensDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0003-2230-0840
Denise N SlenterDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0001-8449-1318
Friederike EhrhartDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0002-7770-620X
Daniela DiglesDepartment of Pharmaceutical Sciences, University of Vienna, Austria.ORCID 0000-0001-5934-3559
Andra WaagmeesterMicelio BV, Ekeren, Belgium.ORCID 0000-0001-9773-4008
Isabel WassinkMaastricht Centre for Systems Biology (MaCSBio), Maastricht University, The Netherlands.ORCID 0009-0007-2045-4009
Tooba Abbassi-DaloiiDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0002-4904-3269
Elisson N LopesDepartment of Epigenetics. Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0003-1661-6304
Aishwarya IyerDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0003-2878-4049
Javier Millán AcostaDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0002-4166-7093
Lars G WillighagenUnaffiliated, The Netherlands.ORCID 0000-0002-4751-4637
Kozo NishidaDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Japan.ORCID 0000-0001-8501-7319
Anders RiuttaData Science and Biotechnology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID 0000-0002-4693-0591
Helena BasaricDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.
Chris T EveloDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0002-5301-3142
Egon L WillighagenDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands.ORCID 0000-0001-7542-0286
Martina KutmonMaastricht Centre for Systems Biology (MaCSBio), Maastricht University, The Netherlands.ORCID 0000-0002-7699-8191
Alexander R PicoData Science and Biotechnology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID 0000-0001-5706-2163

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
WikiPathways Project: At the Intersection of Big Data and Researcher KnowledgeR01GM100039 · NIGMS · J. DAVID GLADSTONE INSTITUTES · PI PICO, ALEXANDER R · 2012 to 2020
$3.4M
NIGMS NIH HHS GM103504NIGMS NIH HHS P41 GM103504NIGMS NIH HHS R01 GM100039ZonMw 10430012010015
6 · The paper itself

Abstract

WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.

Indexed as

Databases, Factual

Identifiers

PMID37941138
PMCPMC10767877

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.