Evidence map›Paper›PMID 37941001›Full record

ArticleInfectious agents and cancer2023

Evaluation of human papillomavirus DNA in colorectal cancer and adjacent mucosal tissue samples.

Luisa Galati, Purnima Gupta, Antonio Tufaro, Mariarosaria Marinaro, Concetta Saponaro, David Israel Escobar Marcillo, Donato Loisi, Rajdip Sen, Alexis Robitaille, Rosario N Brancaccio and 9 more

Open access · goldAbstract read
In one paragraph

Article in Infectious agents and cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 2 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 5 countries.

Luisa GalatiInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Purnima GuptaInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Antonio TufaroInstitutional BioBank, Istituto Tumori "Giovanni Paolo II", IRCCS, Bari, Italy.
Mariarosaria MarinaroDepartment of Infectious Diseases, Istituto Superiore di Sanità, Viale Regina Elena 299, Rome, Italy.
Concetta SaponaroPathology Department, IRCCS Istituto Tumori "Giovanni Paolo II", Bari, Italy.
David Israel Escobar MarcilloInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Donato LoisiPathology Department, IRCCS Istituto Tumori "Giovanni Paolo II", Bari, Italy.
Rajdip SenInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Alexis RobitailleInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Rosario N BrancaccioInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Cyrille CueninInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Sandrine McKay-ChopinInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Angelo Virgilio ParadisoInstitutional BioBank, Istituto Tumori "Giovanni Paolo II", IRCCS, Bari, Italy.
Václav LiškaBiomedical Center, Faculty of Medicine in Pilsen, Charles University, Pilsen, Czech Republic.
Pavel SoučekBiomedical Center, Faculty of Medicine in Pilsen, Charles University, Pilsen, Czech Republic.
Francesco Alfredo ZitoPathology Department, IRCCS Istituto Tumori "Giovanni Paolo II", Bari, Italy.
David J HughesCancer Biology and Therapeutics Group, School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Dublin, Ireland.
Massimo TommasinoInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France.
Tarik GheitInternational Agency for Research on Cancer (IARC), 25 Avenue Tony Garnier, CS 90627, 69366, Lyon Cedex 07, France. gheitt@iarc.who.int.
Centre international de recherche sur le cancer · FRIstituto Tumori Bari · ITCharles University · CZIstituti di Ricovero e Cura a Carattere Scientifico · ITEuropean Institute of Oncology · ITIstituto Superiore di Sanità · ITUniversity College Dublin · IE

Funding

World Health Organization 001
6 · The paper itself

Abstract

backgroundAlthough the role of viral agents, such as human papillomavirus (e.g. HPV16, HPV18) in colorectal cancer (CRC) has been previously investigated, results remain inconclusive.

methodsTo further evaluate the involvement of oncogenic HPV types in CRC, 40 frozen neoplastic and 40 adjacent colonic tissues collected from Italian patients were analyzed by Luminex-based assays that detect a broad spectrum of HPV types, i.e. Alpha (n = 21), Beta (n = 46) and Gamma HPVs (n = 52). In addition, 125 frozen CRC samples and 70 surrounding mucosal tissues were collected from Czech patients and analyzed by broad spectrum PCR protocols: (i) FAP59/64, (ii) FAPM1 and (iii) CUT combined with Next Generation Sequencing (NGS).

resultsUsing Luminex-basedassays, DNA from HPV16 was detected in 5% (2/40) CRC tissues from Italian patients. One HPV16 DNA-positive CRC case was subsequently confirmed positive for E6*I mRNA. Cutaneous beta HPV types were detected in 10% (4/40) adjacent tissues only, namely HPV111 (n = 3) and HPV120 (n = 1), while gamma HPV168 (n = 1) and HPV199 (n = 1) types were detected in adjacent and in tumor tissues, respectively. The NGS analysis of the CRC Czech samples identified HPV sequences from mucosal alpha-3 (HPV89), alpha-7 (HPV18, 39, 68 and 70) and alpha-10 species (HPV11), as well as cutaneous beta-1 (HPV20, 24, 93, 98, 105,124) beta-2 (HPV23), beta-3 (HPV49) and gamma-1 species (HPV205).

conclusionsOur findings indicate that HPV types belonging to the mucosal alpha, and the 'cutaneous' beta and gamma genera can be detected in the colonic mucosal samples with a low prevalence rate and a low number of HPV reads by Luminex and NGS, respectively. However, additional studies are required to corroborate these findings.

Indexed as

Colorectal cancerHPV16Human papillomavirusLuminexNext generation sequencing

Identifiers

PMID37941001
PMCPMC10634082
OpenAlexW4388499764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.