Evidence map›Paper›PMID 37940951›Full record

ArticleAnnals of clinical microbiology and antimicrobials2023

Unveiling the etiology of peritonsillar abscess using next generation sequencing.

Merili Saar, Risto Vaikjärv, Ülle Parm, Priit Kasenõmm, Siiri Kõljalg, Epp Sepp, Madis Jaagura, Andres Salumets, Jelena Štšepetova, Reet Mändar

Abstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  4. Article
  5. Review
  6. Next-generation sequencing of the tonsillar microbiome in severe acute tonsillitis: comparison with healthy controls and culture-based findings.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Unveiling the dark side ofFrontiers in medicine · 2024
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Merili SaarDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia.
Risto VaikjärvEar-Nose-Throat Clinic, Tallinn, Estonia.
Ülle ParmDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia.
Priit KasenõmmEar Clinic, Tartu University Hospital, Tartu, Estonia.
Siiri KõljalgDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia.
Epp SeppDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia.
Madis JaaguraInstitute of Genomics, University of Tartu, Tartu, Estonia.
Andres SalumetsCompetence Center on Health Technologies, Tartu, Estonia.
Jelena ŠtšepetovaDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia.
Reet MändarDepartment of Microbiology, Institute of Biomedicine and Translational Medicine, Faculty of Medicine, University of Tartu, Ravila 19, Tartu, 50411, Estonia. reet.mandar@ut.ee.ORCID http://orcid.org/0000-0002-9747-3618

Funding

Estonian Ministry of Education and Research KOGU-HUMBEttevõtluse Arendamise Sihtasutus EU48695Horizon 2020 ERIN, grant no. EU952516
6 · The paper itself

Abstract

backgroundPeritonsillar abscess (PTA) is a severe deep neck space infection with an insufficiently characterized bacterial etiology. We aimed to reveal the bacteria associated with PTA applying next generation sequencing (NGS). Tonsil biopsies and pus samples of 91 PTA patients were analysed applying NGS method.

resultsOver 400 genera and 800 species belonging to 34 phyla were revealed. The most abundant species in both sample types were Streptococcus pyogenes, Fusobacterium necrophorum and Fusobacterium nucleatum. When present, S. pyogenes was normally a predominant species, although it was recovered as a minor population in some samples dominated by F. nucleatum and occasionally F. necrophorum. S. pyogenes and F. necrophorum were the predominant species (> 10% in a community) in 28 (31%) pus samples, while F. nucleatum in 21 (23%) and S. anginosus in 8 (9%) pus samples. We observed no substantial differences between the microbial findings in pus and tonsil biopsies.

conclusionsThe most probable causative agents of PTA according to our NGS-study include Streptococcus pyogenes, Fusobacterium necrophorum and Fusobacterium nucleatum. Some other streptococci (S. anginosus) and anaerobes (Prevotella, Porphyromonas) may contribute to the infection as well. Pus of the peritonsillar abscess is more representative specimen for microbiological examination than the tonsillar tissue. Our results are important in the context of optimizing the handling of the PTA patients.

Indexed as

Peritonsillar AbscessFusobacterium necrophorumHigh-Throughput Nucleotide SequencingHumansStreptococcus pyogenesFusobacterium necrophorumFusobacterium nucleatumMicrobiotaNext generation sequencing (NGS)Peritonsillar abscess (PTA)Streptococcus pyogenes

Identifiers

PMID37940951
PMCPMC10633907

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.