Evidence map›Paper›PMID 37940862›Full record

ArticleBMC plant biology2023

Transcriptomic characterization of Trichoderma harzianum T34 primed tomato plants: assessment of biocontrol agent induced host specific gene expression and plant growth promotion.

Mohd Aamir, V Shanmugam, Manish Kumar Dubey, Fohad Mabood Husain, Mohd Adil, Waquar Akhter Ansari, Ashutosh Rai, Pankaj Sah

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
8.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. The KeyPlants (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Estimating Efficacy of Indigenous Isolates of ThreeJournal of fungi (Basel, Switzerland) · 2026
    Article
  5. Review
  6. Article
  7. EngineeringAIMS microbiology · 2026
    Review
  8. Mechanisms of action and biocontrol potential ofFrontiers in fungal biology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Mohd AamirDivision of Plant Pathology, ICAR-Indian Agricultural Research Institute, Pusa, New Delhi-110012, Delhi, India. khan.aamir18@gmail.com.
V ShanmugamDivision of Plant Pathology, ICAR-Indian Agricultural Research Institute, Pusa, New Delhi-110012, Delhi, India.
Manish Kumar DubeyDepartment of Biotechnology, University Centre for Research & Development (UCRD), Chandigarh University, Punjab, 140413, India.
Fohad Mabood HusainDepartment of Food Science and Nutrition, College of Food and Agriculture Sciences, King Saud University, Riyadh-11451, Saudi Arabia.
Mohd AdilPlant, Food and Environmental Sciences, Dalhousie University, Truro, NS, B2N2R9, Canada.
Waquar Akhter AnsariDepartment of Botany, Centre for Advanced Study, Institute of Science, Banaras Hindu University, Varanasi, 221002, India.
Ashutosh RaiDepartment of Basic and Social Sciences, College of Horticulture, Banda University of Agriculture and Technology, Uttar Pradesh, Banda, 210001, India.
Pankaj SahApplied Sciences Department, College of Applied Sciences and Pharmacy, University of Technology and Applied Sciences-Muscat, Al Janubyyah Street, PO Box 74, Muscat, 133, Sultanate of Oman.
Indian Agricultural Research Institute · INBanaras Hindu University · INChandigarh University · INDalhousie University · CAKing Saud University · SAMuscat College · OM

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we investigated the intricate interplay between Trichoderma and the tomato genome, focusing on the transcriptional and metabolic changes triggered during the late colonization event. Microarray probe set (GSE76332) was utilized to analyze the gene expression profiles changes of the un-inoculated control (tomato) and Trichoderma-tomato interactions for identification of the differentially expressed significant genes. Based on principal component analysis and R-based correlation, we observed a positive correlation between the two cross-comaparable groups, corroborating the existence of transcriptional responses in the host triggered by Trichoderma priming. The statistically significant genes based on different p-value cut-off scores [(p

Indexed as

HypocrealesSolanum lycopersicumGene Expression ProfilingPlant ProteinsTranscriptomePlant ProteinsBottleneck genesDNA motifFDR correctionHub genesMicroarrayTranscriptional reprogrammingTrichodermaWCGNA analysis

Identifiers

PMID37940862
PMCPMC10631224
OpenAlexW4388495305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.