Evidence map›Paper›PMID 37938715›Full record

ArticleISME communications2022

Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients.

Annika Krueger, Julian Zaugg, Nancy Lachner, Seweryn Bialasiewicz, Lynlee L Lin, Sharon Gabizon, Priyamvada Sobarun, Mark Morrison, H Peter Soyer, Philip Hugenholtz and 1 more

Open access · goldAbstract read
In one paragraph

Article in ISME communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. TargetingFrontiers in oncology · 2023
    Article
  10. Review
  11. Skin Cancer-AssociatedCancers · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Annika Krueger *The University of Queensland Diamantina Institute, Faculty of Medicine, University of Queensland, Translational Research Institute, Woolloongabba, QLD, Australia.ORCID http://orcid.org/0000-0001-5831-5919
Julian Zaugg *Australian Centre for Ecogenomics, University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-4919-1448
Nancy LachnerAustralian Centre for Ecogenomics, University of Queensland, St Lucia, QLD, Australia.
Seweryn BialasiewiczAustralian Centre for Ecogenomics, University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-9474-6943
Lynlee L LinThe University of Queensland Diamantina Institute, The University of Queensland, Dermatology Research Centre, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-3100-9668
Sharon GabizonThe University of Queensland Diamantina Institute, The University of Queensland, Dermatology Research Centre, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-3765-8589
Priyamvada SobarunThe University of Queensland Diamantina Institute, The University of Queensland, Dermatology Research Centre, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-7095-7786
Mark MorrisonThe University of Queensland Diamantina Institute, Faculty of Medicine, University of Queensland, Translational Research Institute, Woolloongabba, QLD, Australia.ORCID http://orcid.org/0000-0001-9257-9133
H Peter SoyerThe University of Queensland Diamantina Institute, The University of Queensland, Dermatology Research Centre, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-4770-561X
Philip HugenholtzAustralian Centre for Ecogenomics, University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-5386-7925
Ian H FrazerThe University of Queensland Diamantina Institute, Faculty of Medicine, University of Queensland, Translational Research Institute, Woolloongabba, QLD, Australia. i.frazer@uq.edu.au.ORCID http://orcid.org/0000-0002-8002-4680
The University of Queensland · AUTranslational Research Institute · AU

Funding

Department of Health | National Health and Medical Research Council (NHMRC) APP1059012Department of Health | National Health and Medical Research Council (NHMRC) APP1071822Department of Health | National Health and Medical Research Council (NHMRC) APP1111216Department of Health | National Health and Medical Research Council (NHMRC) APP1137127Department of Health | National Health and Medical Research Council (NHMRC) APP1181054
6 · The paper itself

Abstract

Actinic keratoses (AK) arise in severely photo-damaged skin and can progress to squamous cell carcinomas (SCC). AK and SCC are common in Caucasian populations, and immunosuppressed individuals have a markedly higher risk of developing SCC. An overabundance of Staphylococcus aureus has been reported in AK and SCC lesions of immunocompetent individuals, however, the AK/SCC microbiome in immunosuppressed cohorts has not been investigated. Here, the microbial profile and bacterial load of AK, SCC and control skin swabs from 32 immunosuppressed organ transplant recipients were characterised via SSU rRNA gene sequencing and qPCR, and compared to a previously described immunocompetent cohort. Although the taxonomic composition of skin swab samples was mostly subject-specific, significant differences were observed between control skin, AK, and SCC in both cohorts. Surface bacterial load was increased and alpha diversity decreased in AK and SCC compared to control skin due to an increased abundance of Staphylococcus species and relative decrease of skin commensals. Staphylococcus epidermidis predominated on SCC from transplant recipients in contrast to SCC of immunocompetent subjects dominated by S. aureus. In conclusion, AK and SCC of immunosuppressed and immunocompetent subjects present with distinctive microbial dysbioses, which may be relevant to SCC pathogenesis and progression.

Identifiers

PMID37938715
PMCPMC9723734
OpenAlexW4220677558

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.