Evidence map›Paper›PMID 37937667›Full record

ArticleThe EMBO journal2023

Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants.

Loris Pratx, Philipp Wendering, Christian Kappel, Zoran Nikoloski, Isabel Bäurle

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  10. Review
  11. Article
  12. The role of DNA content in shaping chromatin architecture and gene expression.The Plant journal : for cell and molecular biology · 2025
    Article
  13. Evolutionary adaptation under climate change:Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Review
  16. Evolutionary adaptation under climate change:bioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Loris PratxPlant Epigenetics, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Philipp WenderingBioinformatics, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Christian KappelGenetics, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany.ORCID 0000-0002-1450-1864
Zoran NikoloskiBioinformatics, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Isabel BäurlePlant Epigenetics, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany.ORCID 0000-0001-5633-8068
University of Potsdam · DE

Funding

EC | ERC | HORIZON EUROPE European Research Council (ERC) CHROMADAPT 725295
6 · The paper itself

Abstract

Plants often experience recurrent stressful events, for example, during heat waves. They can be primed by heat stress (HS) to improve the survival of more severe heat stress conditions. At certain genes, sustained expression is induced for several days beyond the initial heat stress. This transcriptional memory is associated with hyper-methylation of histone H3 lysine 4 (H3K4me3), but it is unclear how this is maintained for extended periods. Here, we determined histone turnover by measuring the chromatin association of HS-induced histone H3.3. Genome-wide histone turnover was not homogenous; in particular, H3.3 was retained longer at heat stress memory genes compared to HS-induced non-memory genes during the memory phase. While low nucleosome turnover retained H3K4 methylation, methylation loss did not affect turnover, suggesting that low nucleosome turnover sustains H3K4 methylation, but not vice versa. Together, our results unveil the modulation of histone turnover as a mechanism to retain environmentally mediated epigenetic modifications.

Indexed as

HistonesNucleosomesChromatinEpigenesis, GeneticHeat-Shock ResponseChromatinHistonesNucleosomesheat stresshistone retentionhistone turnoverprimingtranscriptional memory

Identifiers

PMID37937667
PMCPMC10711655
OpenAlexW4388492939

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.