Evidence map›Paper›PMID 37936127›Full record

ArticleBMC veterinary research2023

Rapid detection of goose astrovirus genotypes 2 using real-time reverse transcription recombinase polymerase amplification.

Haiqin Li, Yujun Zhu, Chunhe Wan, Zhangzhang Wang, Lei Liu, Meifang Tan, Fanfan Zhang, Yanbing Zeng, Jiangnan Huang, Chengcheng Wu and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Haiqin Li *Institute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Yujun Zhu *Guangdong laboratory animals monitoring instituteand Guangdong Provincial Key Laboratory of Laboratory Animals, Guangzhou, 510633, China.
Chunhe WanInstitute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agricultural Sciences, Fuzhou, 350013, Fujian, China.
Zhangzhang WangXingguo County Agricultural Technology Extension Center, Ganzhou, 341000, Jiangxi, China.
Lei LiuXinyuYushui District Center for Agricultural Sciences, Xinyu, 338000, Jiangxi, China.
Meifang TanInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Fanfan ZhangInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Yanbing ZengInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Jiangnan HuangInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Chengcheng WuInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China.
Yu HuangInstitute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agricultural Sciences, Fuzhou, 350013, Fujian, China.
Zhaofeng KangInstitute of Animal Husbandry and Veterinary Medicine, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, Jiangxi, China. kzf18579069658@163.com.
Xiaoqiao GuoJiangxi Provincial Key Laboratory for Animal Health, College of Animal Science and Technology, Jiangxi AgriculturalUniversity, Nanchang, China. xqguo20720@jxau.edu.cn.
Jiangxi Academy of Agricultural Sciences · CNAnimal Science Research Institute · CNFujian Academy of Agricultural Sciences · CNGuangdong Laboratory Animals Monitoring Institute · CNJiangxi Agricultural University · CNXinyu University · CN

Funding

basic research and talent training of Jiangxi Academy of Agricultural Sciences JXSNKYJCRC202205Fujian Provincial Key Laboratory for Avian Diseases Control and Prevention FKADL-2022-03Fujian Science and Technology Project 2020J06029, 2021R1026006Jiangxi Agriculture Research System JXARS-09National Natural Science Foundation 32072935 and 31860723the Innovation Team of Jiangxi Agricultural University JXAUCXTD006
6 · The paper itself

Abstract

backgroundGoose astrovirus (GoAstV) is an important pathogen that causes joint and visceral gout in goslings. It has been circulating in many provinces of China since 2017. Goose astrovirus genotypes 2 (GoAstV-2) is the main epidemic strain, and its high morbidity and mortality have caused huge economic losses to the goose industry. An accurate point-of-care detection for GoAstV-2 is of great significance. In this study, we developed a real-time reverse transcription recombinase polymerase amplification (RT-RPA) method for the on-site detection of GoAstV-2 infection.

resultsThe real-time RT-RPA reaction was carried out at a constant temperature of 39 °C, and the entire detection time from nucleic acid preparation to the end of amplification was only 25 min using the portable device. The results of a specificity analysis showed that no cross-reaction was observed with other related pathogens. The detection limit of the assay was 100 RNA copies/μL. The low coefficient of variation value indicated excellent repeatability. We used 270 clinical samples to evaluate the performance of our established method, the positive concordance rates with RT-qPCR were 99.6%, and the linear regression analysis revealed a strong correlation.

conclusionsThe established real-time RT-RPA assay showed high rapidity, specificity and sensitivity, which can be widely applied in the laboratory, field and especially in the resource-limited settings for GoAstV-2 point-of-care diagnosis.

Indexed as

RecombinasesReverse TranscriptionAnimalsChinaGeeseNucleic Acid Amplification TechniquesReal-Time Polymerase Chain ReactionSensitivity and SpecificityRecombinasesGoose astrovirus genotypes 2Point-of-care diagnosisReal-timeReverse transcription recombinase polymerase amplification

Identifiers

PMID37936127
PMCPMC10629041
OpenAlexW4388456060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.