Evidence map›Paper›PMID 37935360›Full record

ArticleJournal of the Royal Society, Interface2023

Red edge excitation shift spectroscopy is highly sensitive to tryptophan composition.

Annmaree K Warrender, Jolyn Pan, Chris Pudney, Vickery L Arcus, William Kelton

Open access · hybridAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Annmaree K WarrenderTe Huataki Waiora School of Health, University of Waikato, Hamilton, New Zealand.
Jolyn PanTe Aka Mātuatua School of Science, University of Waikato, Hamilton, New Zealand.
Chris PudneyDepartment of Biology and Biochemistry, University of Bath, Bath, UK.
Vickery L ArcusTe Aka Mātuatua School of Science, University of Waikato, Hamilton, New Zealand.ORCID 0000-0001-5082-2414
William KeltonTe Huataki Waiora School of Health, University of Waikato, Hamilton, New Zealand.ORCID 0000-0002-5513-6429
University of Waikato · NZUniversity of Bath · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Red edge excitation shift (REES) spectroscopy relies on the unique emission profiles of fluorophore-solvent interactions to profile protein molecular dynamics. Recently, we reported the use of REES to compare the stability of 32 polymorphic IgG antibodies natively containing tryptophan reporter fluorophores. Here, we expand on this work to investigate the sensitivity of REES to variations in tryptophan content using a subset of IgG3 antibodies containing arginine to tryptophan polymorphisms. Structural analysis revealed that the additional tryptophan residues were situated in highly solvated environments. Subsequently, REES showed clear differences in fluorescence emission profiles when compared with the unmutated variants, thereby limiting direct comparison of their structural dynamics. These findings highlight the exquisite sensitivity of REES to minor variations in protein structure and tryptophan composition.

Indexed as

ProteinsTryptophanSpectrometry, FluorescenceProteinsTryptophanantibodiesprotein dynamicsprotein stabilityred edge excitation shifttryptophan fluorescence

Identifiers

PMID37935360
PMCPMC10645072
OpenAlexW4388479516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.