Evidence map›Paper›PMID 37934255›Full record

ArticleJournal of cancer research and clinical oncology2023

Construction of an EMT-related lncRNA prognostic signature for lung adenocarcinoma and functional verification of its hub gene LINC01615.

Yifan Shan, Tingting Xia, Weijia Xie, Weiping Wan, Na Wu, Zhiquan Yuan, Qin Hu, Zheng Chen, Chengying Li, Long Wu and 5 more

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Yifan Shan *Department of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Tingting Xia *Department of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Weijia XieDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Weiping WanDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Na WuDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Zhiquan YuanDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Qin HuDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Zheng ChenDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Chengying LiDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Long WuDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Wenhui WuDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Tongjian CaiDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China.
Ying XiangDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China. shmily777xy@sina.com.
Li BaiDepartment of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Army Medical University, Chongqing, 400037, People's Republic of China. blpost@126.com.
Yafei LiDepartment of Epidemiology, College of Preventive Medicine, Army Medical University, Chongqing, 400038, People's Republic of China. liyafei2008@hotmail.com.
Army Medical University · CNDalian Medical University · CN

Funding

National Natural Science Foundation of China 81871896
6 · The paper itself

Abstract

backgroundThe epithelial-mesenchymal transition (EMT) plays a vital role in the progression of lung adenocarcinoma (LUAD). Long non-coding RNAs (lncRNAs) participate in the EMT process as an important regulatory factor and have the potential to serve as prognostic biomarkers. We aimed to construct a novel lncRNA prognostic signature for LUAD based on EMT-related lncRNAs, identify EMT-related hub lncRNA, and investigate its biological functions.

methodsRNA-seq data, clinical and survival information were obtained from The Cancer Genome Atlas database. The EMT-related lncRNA prognostic signature (EMTscore) was constructed using the Least Absolute Shrinkage and Selection Operator Cox regression analysis. The efficiency of EMTscore in predicting the prognosis of LUAD was evaluated through the area under the time-dependent receiver operating characteristic (ROC) curves. The hub lncRNA of the prognostic signature was selected using a co-expression network map, and its effects on cell proliferation and metastasis were explored by in vitro experiments.

resultsWe constructed a prognostic signature (EMTscore) containing 8 tumor-high expressed lncRNAs. The EMTscore performed well in predicting overall survival rates with AUC values of 0.708 at 5 years in the training set. EMTscore could independently predict the survival of LUAD, with HR = 4.011 (95% CI 2.430-6.622) in the multivariate Cox regression. Importantly, we identified LINC01615 as the hub lncRNA in the EMTscore and revealed that LINC01615 enhanced the proliferation, migration, and EMT of lung cancer cells.

conclusionsA new EMT-related lncRNA prognostic signature named EMTscore was developed, and LINC01615 was identified as the hub lncRNA of EMTscore. The hub lncRNA LINC01615 had an oncogenic biological function in LUAD.

Indexed as

AdenocarcinomaRNA, Long NoncodingCell ProliferationEpithelial-Mesenchymal TransitionHumansPrognosisRNA, Long NoncodingEpithelial-mesenchymal transitionlncRNAsLung adenocarcinomaPrognosis

Identifiers

PMID37934255
PMCPMC11797361
OpenAlexW4388456073

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.