Evidence map›Paper›PMID 37934243›Full record

ArticleEuropean radiology2024

Development of image-based decision support systems utilizing information extracted from radiological free-text report databases with text-based transformers.

Sebastian Nowak, Helen Schneider, Yannik C Layer, Maike Theis, David Biesner, Wolfgang Block, Benjamin Wulff, Ulrike I Attenberger, Rafet Sifa, Alois M Sprinkart

Open access · hybridAbstract read
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Article in European radiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sebastian Nowak *Department of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany. sebastian.nowak@ukbonn.de.ORCID http://orcid.org/0000-0001-5175-5559
Helen Schneider *Fraunhofer Institute for Intelligent Analysis and Information Systems IAIS, Sankt Augustin, Germany.
Yannik C LayerDepartment of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany.
Maike TheisDepartment of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany.
David BiesnerFraunhofer Institute for Intelligent Analysis and Information Systems IAIS, Sankt Augustin, Germany.
Wolfgang BlockDepartment of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany.
Benjamin WulffFraunhofer Institute for Intelligent Analysis and Information Systems IAIS, Sankt Augustin, Germany.
Ulrike I AttenbergerDepartment of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany.
Rafet Sifa *Fraunhofer Institute for Intelligent Analysis and Information Systems IAIS, Sankt Augustin, Germany.
Alois M Sprinkart *Department of Diagnostic and Interventional Radiology, University Hospital Bonn, Bonn, Germany.
University Hospital Bonn · DEFraunhofer Institute for Intelligent Analysis and Information Systems · DE

Funding

Bundesministerium für Bildung und Forschung 01KX2121Bundesministerium für Bildung und Forschung 01|S18038B
6 · The paper itself

Abstract

objectivesTo investigate the potential and limitations of utilizing transformer-based report annotation for on-site development of image-based diagnostic decision support systems (DDSS).

methodsThe study included 88,353 chest X-rays from 19,581 intensive care unit (ICU) patients. To label the presence of six typical findings in 17,041 images, the corresponding free-text reports of the attending radiologists were assessed by medical research assistants ("gold labels"). Automatically generated "silver" labels were extracted for all reports by transformer models trained on gold labels. To investigate the benefit of such silver labels, the image-based models were trained using three approaches: with gold labels only (M

resultsUtilizing transformer-based silver labels showed significantly higher macro-averaged AUC than training solely with gold labels (N = 1000: M

conclusionsTransformer-based annotation has potential for unlocking free-text report databases for the development of image-based DDSS. However, on-site development of image-based DDSS could benefit from more sophisticated annotation pipelines including further information than a single radiological report. CLINICAL RELEVANCE STATEMENT: Leveraging clinical databases for on-site development of artificial intelligence (AI)-based diagnostic decision support systems by text-based transformers could promote the application of AI in clinical practice by circumventing highly regulated data exchanges with third parties. KEY POINTS: • The amount of data from a database that can be used to develop AI-assisted diagnostic decision systems is often limited by the need for time-consuming identification of pathologies by radiologists. • The transformer-based structuring of free-text radiological reports shows potential to unlock corresponding image databases for on-site development of image-based diagnostic decision support systems. • However, the quality of image annotations generated solely on the content of a single radiology report may be limited by potential inaccuracies and incompleteness of this report.

Indexed as

Decision Support Systems, ClinicalRadiography, ThoracicDatabases, FactualHumansIntensive Care UnitsRadiology Information SystemsDeep learningIntensive care unitsRadiologyThorax

Identifiers

PMID37934243
PMCPMC11126497
OpenAlexW4388460937

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.