Evidence map›Paper›PMID 37934130›Full record

ArticleDevelopment (Cambridge, England)2023

Multi-level regulation of even-skipped stripes by the ubiquitous factor Zelda.

Timothy R Bishop, Pinar Onal, Zhe Xu, Michael Zheng, Himari Gunasinghe, Chung-Yi Nien, Stephen Small, Rhea R Datta

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Timothy R BishopDepartment of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.
Pinar OnalDepartment of Molecular Biology and Genetics, Ihsan Dogramaci Bilkent University, Universiteler Mahallesi, 06800 Ankara, Turkey.
Zhe XuDepartment of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.
Michael ZhengDepartment of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.
Himari GunasingheDepartment of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.
Chung-Yi NienDepartment of Life Sciences, National Central University, Taoyuan 32001, Taiwan.
Stephen SmallDepartment of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.
Rhea R DattaDepartment of Biology, Hamilton College, 198 College Hill Rd., Clinton, NY 13323, USA.ORCID 0000-0002-2382-8930
New York University · USBilkent University · TRHamilton College · USNational Central University · TW

Funding

ENHANCER-MEDIATED MECHANISMS OF PATTERN FORMATIONR01GM051946 · NIGMS · NEW YORK UNIVERSITY · PI SMALL, STEPHEN J · 1996 to 2019
$5.5M
NIGMS NIH HHS R01 GM051946NIH HHSNIH HHS RO1 GM 51946
6 · The paper itself

Abstract

The zinc-finger protein Zelda (Zld) is a key activator of zygotic transcription in early Drosophila embryos. Here, we study Zld-dependent regulation of the seven-striped pattern of the pair-rule gene even-skipped (eve). Individual stripes are regulated by discrete enhancers that respond to broadly distributed activators; stripe boundaries are formed by localized repressors encoded by the gap genes. The strongest effects of Zld are on stripes 2, 3 and 7, which are regulated by two enhancers in a 3.8 kb genomic fragment that includes the eve basal promoter. We show that Zld facilitates binding of the activator Bicoid and the gap repressors to this fragment, consistent with its proposed role as a pioneer protein. To test whether the effects of Zld are direct, we mutated all canonical Zld sites in the 3.8 kb fragment, which reduced expression but failed to phenocopy the abolishment of stripes caused by removing Zld in trans. We show that Zld also indirectly regulates the eve stripes by establishing specific gap gene expression boundaries, which provides the embryonic spacing required for proper stripe activation.

Indexed as

Drosophila ProteinsAnimalsDrosophilaDrosophila melanogasterGene Expression Regulation, DevelopmentalHomeodomain ProteinsNuclear ProteinsPromoter Regions, GeneticTranscription FactorsDrosophila Proteinseve protein, DrosophilaHomeodomain ProteinsNuclear ProteinsTranscription Factorszld protein, DrosophilaCis regulationCross-repressionDrosophilaEmbryogenesisEven-skippedTranscriptional regulationZelda

Identifiers

PMID37934130
PMCPMC10730019
OpenAlexW4388464746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.