Evidence map›Paper›PMID 37933982›Full record

ArticleMicrobiology spectrum2023

Refining PRRSV-2 genetic classification based on global ORF5 sequences and investigation of their geographic distributions and temporal changes.

Wannarat Yim-Im, Tavis K Anderson, Igor A D Paploski, Kimberly VanderWaal, Phillip Gauger, Karen Krueger, Mang Shi, Rodger Main, Jianqiang Zhang

Abstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wannarat Yim-ImVeterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University , Ames, Iowa, USA.
Tavis K AndersonVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS , Ames, Iowa, USA.
Igor A D PaploskiDepartment of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota , St. Paul, Minnesota, USA.
Kimberly VanderWaalDepartment of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota , St. Paul, Minnesota, USA.
Phillip GaugerVeterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University , Ames, Iowa, USA.ORCID 0000-0003-2540-8769
Karen KruegerVeterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University , Ames, Iowa, USA.
Mang ShiSchool of Medicine, Shenzhen Campus of Sun Yat-sen University, Sun Yat-sen University , Shenzhen, China.
Rodger MainVeterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University , Ames, Iowa, USA.
Jianqiang ZhangVeterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University , Ames, Iowa, USA.ORCID 0000-0001-7228-6202

Funding

American Association of Swine Veterinarians Foundation
6 · The paper itself

Abstract

importanceIn this study, comprehensive analysis of 82,237 global porcine reproductive and respiratory syndrome virus type 2 (PRRSV-2) open reading frame 5 sequences spanning from 1989 to 2021 refined PRRSV-2 genetic classification system, which defines 11 lineages and 21 sublineages and provides flexibility for growth if additional lineages, sublineages, or more granular classifications are needed in the future. Geographic distribution and temporal changes of PRRSV-2 were investigated in detail. This is a thorough study describing the molecular epidemiology of global PRRSV-2. In addition, the reference sequences based on the refined genetic classification system are made available to the public for future epidemiological and diagnostic applications worldwide. The data from this study will facilitate global standardization and application of PRRSV-2 genetic classification.

Indexed as

Porcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusAnimalsGenetic VariationOpen Reading FramesPhylogenySwinegenetic classificationlineagemolecular epidemiologyORF5PRRSV-2restriction fragment length polymorphism analysissublineage

Identifiers

PMID37933982
PMCPMC10848785

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.