Evidence map›Paper›PMID 37933860›Full record

ArticleNucleic acids research2024

BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis.

Magnús H Gíslason, Gül Sude Demircan, Marek Prachar, Benjamin Furtwängler, Juerg Schwaller, Erwin M Schoof, Bo Torben Porse, Nicolas Rapin, Frederik Otzen Bagger

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Magnús H GíslasonCenter for Genomic Medicine, Rigshospitalet Copenhagen University Hospital, Copenhagen DK-2200, Denmark.
Gül Sude DemircanCenter for Genomic Medicine, Rigshospitalet Copenhagen University Hospital, Copenhagen DK-2200, Denmark.
Marek PracharCenter for Genomic Medicine, Rigshospitalet Copenhagen University Hospital, Copenhagen DK-2200, Denmark.
Benjamin FurtwänglerThe Finsen Laboratory, Copenhagen University Hospital-Rigshospitalet, Copenhagen DK-2200, Denmark.
Juerg SchwallerUniversity Children's Hospital Basel, University of Basel, Basel, Switzerland.
Erwin M SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark.
Bo Torben PorseThe Finsen Laboratory, Copenhagen University Hospital-Rigshospitalet, Copenhagen DK-2200, Denmark.
Nicolas RapinDanish National Genome Center, Copenhagen DK-2300, Denmark.
Frederik Otzen BaggerCenter for Genomic Medicine, Rigshospitalet Copenhagen University Hospital, Copenhagen DK-2200, Denmark.ORCID 0000-0003-0636-8845

Funding

Independent Research Fund Denmark 2067-00053BLundbeck Foundation R413-2022-869Novo Nordisk Foundation NNF19SA0035442Novo Nordisk Foundation NNF21OC0071016
6 · The paper itself

Abstract

BloodSpot is a specialised database integrating gene expression data from acute myeloid leukaemia (AML) patients related to blood cell development and maturation. The database and interface has helped numerous researchers and clinicians to quickly get an overview of gene expression patterns in healthy and malignant haematopoiesis. Here, we present an update to our framework that includes protein expression data of sorted single cells. With this update we also introduce datasets broadly spanning age groups, which many users have requested, with particular interest for researchers studying paediatric leukaemias. The backend of the database has been rewritten and migrated to a cloud-based environment to accommodate the growth, and provide a better user-experience for our many international users. Users can now enjoy faster transfer speeds and a more responsive interface. In conclusion, the continuing popularity of the database and emergence of new data modalities has prompted us to rewrite and futureproof the back-end, including paediatric centric views, as well as single cell protein data, allowing us to keep the database updated and relevant for the years to come. The database is freely available at www.bloodspot.eu.

Indexed as

HematopoiesisLeukemia, Myeloid, AcuteBlood CellsCell DifferentiationChildDatabases, GeneticHumansProteinsProteins

Identifiers

PMID37933860
PMCPMC10768446

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.