Evidence map›Paper›PMID 37933844›Full record

ArticleNucleic acids research2023

Human lysyl-tRNA synthetase phosphorylation promotes HIV-1 proviral DNA transcription.

Yingke Tang, Ryan T Behrens, Corine St Gelais, Siqi Wu, Saravanan Vivekanandan, Ehud Razin, Pengfei Fang, Li Wu, Nathan Sherer, Karin Musier-Forsyth

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Structural basis for aminoacylation of cellular modified tRNAbioRxiv : the preprint server for biology · 2024
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Yingke TangDepartment of Chemistry and Biochemistry, Ohio State University, Columbus, OH, USA.
Ryan T BehrensMcArdle Laboratory for Cancer Research, Institute for Molecular Virology, & Carbone Cancer Center, University of Wisconsin, Madison, WI, USA.
Corine St GelaisCenter for Retrovirus Research, Ohio State University, Columbus, OH, USA.
Siqi WuState Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, China.
Saravanan VivekanandanCellular and Molecular Mechanisms of Inflammation Program, National University of Singapore and The Hebrew University of Jerusalem (NUS-HUJ), Singapore.
Ehud RazinDepartment of Biochemistry and Molecular Biology, Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem, Israel.ORCID 0000-0001-8041-3718
Pengfei FangState Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, China.ORCID 0000-0002-3448-5494
Li WuDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Nathan ShererMcArdle Laboratory for Cancer Research, Institute for Molecular Virology, & Carbone Cancer Center, University of Wisconsin, Madison, WI, USA.ORCID 0000-0001-9974-236X
Karin Musier-ForsythDepartment of Chemistry and Biochemistry, Ohio State University, Columbus, OH, USA.ORCID 0000-0002-0354-4172
The Ohio State University · USChinese Academy of Sciences · CNUniversity of Wisconsin–Madison · USHebrew University of Jerusalem · ILNational University of Singapore · SGUniversity of Iowa · US

Funding

Center for Structural Biology of HIV RNAU54AI170660 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALICE TELESNITSKY · 2022 to 2026
$32.1M
The Cell Biology of HIV-1 Genome TraffickingR01AI110221 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI Nathan M Sherer · 2014 to 2026
$4.4M
Targeting HIV-1 RNA modifications in latently infected CD4+ T cells for therapeutic developmentR61AI169659 · NIAID · UNIVERSITY OF IOWA · PI WU, LI · 2022 to 2024
$2.2M
SAMHD1-mediated regulation of HIV-1 innate immunity and viral gene expressionR01AI141495 · NIAID · UNIVERSITY OF IOWA · PI WU, LI · 2019 to 2023
$1.9M
Cellular Factors Critical for Initiation of HIV-1 Reverse TranscriptaseR01AI150493 · NIAID · OHIO STATE UNIVERSITY · PI MUSIER-FORSYTH, KARIN M · 2020 to 2022
$1.2M
Exploiting Natural Post-Integration Barriers to Restrict HIV-1 ReplicationR21AI143800 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KUMAR, PRITI, SHERER, NATHAN M · 2019 to 2020
$460k
HIV-1-induced upregulation of m6A modifications of cellular RNA in CD4+ T-cellsR21AI170070 · NIAID · UNIVERSITY OF IOWA · PI PHILLIPS, STACIA L, WU, LI · 2022 to 2023
$425k
NIAID NIH HHS R01 AI110221NIAID NIH HHS R01 AI141495NIAID NIH HHS R01 AI150493NIAID NIH HHS R21 AI143800NIAID NIH HHS R61 AI169659NIAID NIH HHS U54 AI170660NIH HHS R01 AI150493
6 · The paper itself

Abstract

Human lysyl-tRNA synthetase (LysRS) was previously shown to be re-localized from its normal cytoplasmic location in a multi-aminoacyl-tRNA synthetase complex (MSC) to the nucleus of HIV-1 infected cells. Nuclear localization depends on S207 phosphorylation but the nuclear function of pS207-LysRS in the HIV-1 lifecycle is unknown. Here, we show that HIV-1 replication was severely reduced in a S207A-LysRS knock-in cell line generated by CRISPR/Cas9; this effect was rescued by S207D-LysRS. LysRS phosphorylation up-regulated HIV-1 transcription, as did direct transfection of Ap4A, an upstream transcription factor 2 (USF2) activator that is synthesized by pS207-LysRS. Overexpressing an MSC-derived peptide known to stabilize LysRS MSC binding inhibited HIV-1 replication. Transcription of HIV-1 proviral DNA and other USF2 target genes was reduced in peptide-expressing cells. We propose that nuclear pS207-LysRS generates Ap4A, leading to activation of HIV-1 transcription. Our results suggest a new role for nuclear LysRS in facilitating HIV-1 replication and new avenues for antiviral therapy.

Indexed as

Cell NucleusHIV-1Lysine-tRNA LigaseDNAHumansPeptidesPhosphorylationProvirusesVirus ReplicationDNALysine-tRNA LigasePeptides

Identifiers

PMID37933844
PMCPMC10711549
OpenAlexW4388454584

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.