Evidence map›Paper›PMID 37933235›Full record

ArticleExploration (Beijing, China)2023

Alteration of chromatin high-order conformation associated with oxaliplatin resistance acquisition in colorectal cancer cells.

Peilong Li, Xueying Shang, Qinlian Jiao, Qi Mi, Mengqian Zhu, Yidan Ren, Juan Li, Li Li, Jin Liu, Chuanxin Wang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Exploration (Beijing, China), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  12. Super-resolution imaging forActa pharmaceutica Sinica. B · 2024
    Article
  13. Emerging strategies for combatingExploration (Beijing, China) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Peilong LiDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Xueying ShangKey Laboratory of Systems Biomedicine, Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University Shanghai China.
Qinlian JiaoShandong Quality Inspection Center for Medical Devices Jinan Shandong China.
Qi MiDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Mengqian ZhuDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Yidan RenDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Juan LiDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Li LiWuhan GeneCreate Biological Engineering Co., Ltd Wuhan Hubei China.
Jin LiuWuhan GeneCreate Biological Engineering Co., Ltd Wuhan Hubei China.
Chuanxin WangDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Yi ShiBio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders Shanghai Jiao Tong University Shanghai China.
Yunshan WangDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.
Lutao DuDepartment of Clinical Laboratory The Second Hospital of Shandong University Jinan Shandong China.ORCID https://orcid.org/0000-0002-5097-9814
Second Hospital of Shandong University · CNWuhan Science and Technology Bureau · CNShandong Institute for Product Quality Inspection · CNShanghai Jiao Tong University · CNThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oxaliplatin is a first-line chemotherapy drug widely adopted in colorectal cancer (CRC) treatment. However, a large proportion of patients tend to become resistant to oxaliplatin, causing chemotherapy to fail. At present, researches on oxaliplatin resistance mainly focus on the genetic and epigenetic alterations during cancer evolution, while the characteristics of high-order three-dimensional (3D) conformation of genome are yet to be explored. In order to investigate the chromatin conformation alteration during oxaliplatin resistance, we performed multi-omics study by combining DLO Hi-C, ChIP-seq as well as RNA-seq technologies on the established oxaliplatin-resistant cell line HCT116-OxR, as well as the control cell line HCT116. The results indicate that 19.33% of the genome regions have A/B compartments transformation after drug resistance, further analysis of the genes converted by A/B compartments reveals that the acquisition of oxaliplatin resistance in tumor cells is related to the reduction of reactive oxygen species and enhanced metastatic capacity. Our research reveals the spatial chromatin structural difference between CRC cells and oxaliplatin resistant cells based on the DLO Hi-C and other epigenetic omics experiments. More importantly, we provide potential targets for oxaliplatin-resistant cancer treatment and a new way to investigate drug resistance behavior under the perspective of 3D genome alteration.

Indexed as

3D spatial structurecolorectal cancermulti‐omicsoxaliplatin resistance

Identifiers

PMID37933235
PMCPMC10624369
OpenAlexW4378716998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.