Evidence map›Paper›PMID 37932809›Full record

ArticleGenome medicine2023

Building blocks for better biorepositories in Africa.

Talishiea Croxton, Emmanuel Jonathan, Kareemah Suleiman, Olasinbo Balogun, Petronilla J Ozumba, Sharley M Aloyo, Gideon Nsubuga, Rogers E Kamulegeya, Lwanga Newton, John Mukisa and 13 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 4 countries.

Talishiea CroxtonI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria. tcroxton@ihv.umaryland.edu.ORCID http://orcid.org/0000-0003-3095-3817
Emmanuel JonathanI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Kareemah SuleimanI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Olasinbo BalogunI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Petronilla J OzumbaI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Sharley M AloyoIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Gideon NsubugaIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Rogers E KamulegeyaIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Lwanga NewtonIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
John MukisaIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Mukthar KaderClinical Laboratory Services, Wits Diagnostic Innovation Hub, University of the Witwatersrand, Johannesburg, South Africa.
Vuyo DamaneiteClinical Laboratory Services, Wits Diagnostic Innovation Hub, University of the Witwatersrand, Johannesburg, South Africa.
Sunji NadomaI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Ezenwa James OnyemataI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Abbas Abel AnzakuI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
Emmanuel NasingheIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Jennifer TroyerNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Bonnie R JoubertNational Institute of Environmental Health Sciences, National Institutes of Health, Durham, NC, USA.
Christine BeiswangerUniversity of Maryland School of Medicine, Institute of Human Virology, University of Maryland Baltimore, 725 West Lombard Street Suite, Baltimore, MD, USA.
Moses L JolobaIntegrated Biorepository of H3Africa Uganda, Kampala, Uganda.
Elizabeth MayneDivision of Immunology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, National Health Laboratory Service, Johannesburg, South Africa.
Alash'le AbimikuI-HAB, Institute of Human Virology Nigeria, Abuja, Nigeria.
H3Africa Biorepository PI Working Group
Institute of Human Virology · NGMakerere University · UGUniversity of Maryland, Baltimore · USNational Institutes of Health · USUniversity of the Witwatersrand · ZANational Health Laboratory Service · ZA

Funding

Establishment of an H3Africa Biorepository at Contract Laboratory ServicesUH3HG007438 · NHGRI · WITS HEALTH CONSORTIUM (PTY), LTD · PI MAYNE, ELIZABETH · 2014 to 2018
$4.5M
IHVN H3 Africa Biorepository InitiativeUH3HG007008 · NHGRI · INSTITUTE OF HUMAN VIROLOGY · PI ABIMIKU, ALASH'LE G. · 2015 to 2018
$2.9M
Intergrated Biorepository of H3Africa UgandaU24HG007051 · NHGRI · MAKERERE UNIVERSITY COLLEGE OF HEALTH SCIENCES · PI JOLOBA, MOSES LUTAAKOME · 2019 to 2022
$2.5M
Human Heredity and Health in Africa Consortium BiorepositoryU24HG007438 · NHGRI · WITS HEALTH CONSORTIUM (PTY), LTD · PI MAYNE, ELIZABETH · 2019 to 2022
$1.3M
NHGRI NIH HHS U24 HG007051NHGRI NIH HHS U24 HG007438NHGRI NIH HHS UH3 HG007008NHGRI NIH HHS UH3 HG007438NIH HHS 5U24HG007051-09NIH HHS 5U24HG007438-09
6 · The paper itself

Abstract

backgroundBiorepositories archive and distribute well-characterized biospecimens for research to support the development of medical diagnostics and therapeutics. Knowledge of biobanking and associated practices is incomplete in low- and middle-income countries where disease burden is disproportionately high. In 2011, the African Society of Human Genetics (AfSHG), the National Institutes of Health (NIH), and the Wellcome Trust founded the Human Heredity and Health in Africa (H3Africa) consortium to promote genomic research in Africa and established a network of three biorepositories regionally located in East, West, and Southern Africa to support biomedical research. This manuscript describes the processes established by H3Africa biorepositories to prepare research sites to collect high-quality biospecimens for deposit at H3Africa biorepositories.

methodsThe biorepositories harmonized practices between the biorepositories and the research sites. The biorepositories developed guidelines to establish best practices and define biospecimen requirements; standard operating procedures (SOPs) for common processes such as biospecimen collection, processing, storage, transportation, and documentation as references; requirements for minimal associated datasets and formats; and a template material transfer agreements (MTA) to govern biospecimen exchange. The biorepositories also trained and mentored collection sites in relevant biobanking processes and procedures and verified biospecimen deposit processes. Throughout these procedures, the biorepositories followed ethical and legal requirements.

resultsThe 20 research projects deposited 107,982 biospecimens (76% DNA, 81,067), in accordance with the ethical and legal requirements and established best practices. The biorepositories developed and customized resources and human capacity building to support the projects. [The biorepositories developed 34 guidelines, SOPs, and documents; trained 176 clinicians and scientists in over 30 topics; sensitized ethical bodies; established MTAs and reviewed consent forms for all projects; attained import permits; and evaluated pilot exercises and provided feedback.

conclusionsBiobanking in low- and middle-income countries by local skilled staff is critical to advance biobanking and genomic research and requires human capacity and resources for global partnerships. Biorepositories can help build human capacity and resources to support biobanking by partnering with researchers. Partnerships can be structured and customized to incorporate document development, ethics, training, mentorship, and pilots to prepare sites to collect, process, store, and transport biospecimens of high quality for future research.

Indexed as

Biological Specimen BanksBiomedical ResearchAfricaGenomeGenomicsHumansBiorepositoryCapacity buildingH3Africa consortium

Identifiers

PMID37932809
PMCPMC10626646
OpenAlexW4388421329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.