Evidence map›Paper›PMID 37931870›Full record

ArticleNeuroImage2023

Unified topological inference for brain networks in temporal lobe epilepsy using the Wasserstein distance.

Moo K Chung, Camille Garcia Ramos, Felipe Branco De Paiva, Jedidiah Mathis, Vivek Prabhakaran, Veena A Nair, Mary E Meyerand, Bruce P Hermann, Jeffrey R Binder, Aaron F Struck

Abstract read
In one paragraph

Article in NeuroImage, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Moo K ChungDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, USA. Electronic address: mkchung@wisc.edu.
Camille Garcia RamosDepartment of Neurology, University of Wisconsin-Madison, USA. Electronic address: garciaramos@wisc.edu.
Felipe Branco De PaivaDepartment of Neurology, University of Wisconsin-Madison, USA. Electronic address: fbpaiva@neurology.wisc.edu.
Jedidiah MathisDepartment of Neurology, Medical College of Wisconsin, USA. Electronic address: jmathis@mcw.edu.
Vivek PrabhakaranDepartment of Radiology, University of Wisconsin-Madison, USA. Electronic address: prabhakaran@wisc.edu.
Veena A NairDepartment of Radiology, University of Wisconsin-Madison, USA. Electronic address: vnair@uwhealth.org.
Mary E MeyerandDepartments of Medical Physics & Biomedical Engineering, University of Wisconsin-Madison, USA. Electronic address: memeyerand@wisc.edu.
Bruce P HermannDepartment of Neurology, University of Wisconsin-Madison, USA. Electronic address: hermann@neurology.wisc.edu.
Jeffrey R BinderDepartment of Neurology, Medical College of Wisconsin, USA. Electronic address: jbinder@mcw.edu.
Aaron F StruckDepartment of Neurology, University of Wisconsin-Madison, USA. Electronic address: struck@neurology.wisc.edu.

Funding

The Epilepsy Connectome ProjectU01NS093650 · NINDS · MEDICAL COLLEGE OF WISCONSIN · PI BINDER, JEFFREY R, MEYERAND, MARY E. · 2015 to 2018
$5.1M
Clarifying the overlapping pathology of delirium and dementiaR01AG063849 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Richard C Lennertz, Robert D Sanders · 2019 to 2026
$5.0M
The Juvenile Myoclonic Epilepsy Connectome ProjectR01NS111022 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI STRUCK, AARON F · 2020 to 2024
$3.1M
PET/MR Correlates of Accelerated Aging in Chronic EpilepsyR01NS117568 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI Alan Blair McMillan, Vivek Prabhakaran · 2021 to 2026
$3.0M
Stroke Rehabilitation utilizing BCI technologyR01NS105646 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI PRABHAKARAN, VIVEK · 2018 to 2022
$2.3M
Dynamic embedding time series models in functional brain imagingR01MH133614 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI MOO K CHUNG · 2023 to 2026
$1.4M
Dynamic manifold-valued time series model in functional brain imagingR01EB028753 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI CHUNG, MOO K · 2020 to 2022
$942k
NIA NIH HHS R01 AG063849NIBIB NIH HHS R01 EB028753NIMH NIH HHS R01 MH133614NINDS NIH HHS R01 NS105646NINDS NIH HHS R01 NS117568NINDS NIH HHS U01 NS093650
6 · The paper itself

Abstract

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.

Indexed as

Epilepsy, Temporal LobeBrainHumansMagnetic Resonance ImagingModels, StatisticalNerve Net

Identifiers

PMID37931870
PMCPMC11074922

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.