Evidence map›Paper›PMID 37931146›Full record

ArticleMolecular biology and evolution2023

Evolutionary "Crowdsourcing": Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene.

Olivia Kosterlitz, Nathan Grassi, Bailey Werner, Ryan Seamus McGee, Eva M Top, Benjamin Kerr

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Deconstructing empirical fitness seascapes across scales of granularity.bioRxiv : the preprint server for biology · 2026
    Article
  3. Plasmid mutation rates scale with copy number.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Olivia KosterlitzBiology Department, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-8692-9595
Nathan GrassiBiology Department, University of Washington, Seattle, WA 98195, USA.
Bailey WernerBiology Department, University of Washington, Seattle, WA 98195, USA.
Ryan Seamus McGeeBEACON Center for the Study of Evolution in Action, East Lansing, MI 48824, USA.ORCID 0000-0002-5142-7552
Eva M TopBEACON Center for the Study of Evolution in Action, East Lansing, MI 48824, USA.ORCID 0000-0002-6380-8782
Benjamin KerrBiology Department, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-9909-7070

Funding

THE ORIGIN AND SPREAD OF MOSAIC PLASMIDS ENCODING MULTI-DRUG RESISTANCE(Research Supplement to Promote Diversity)R01AI084918 · NIAID · UNIVERSITY OF IDAHO · PI TOP, EVA M. · 2010 to 2022
$3.6M
NIAID NIH HHS R01 AI084918
6 · The paper itself

Abstract

Genes that undergo horizontal gene transfer (HGT) evolve in different genomic backgrounds. Despite the ubiquity of cross-species HGT, the effects of switching hosts on gene evolution remains understudied. Here, we present a framework to examine the evolutionary consequences of host-switching and apply this framework to an antibiotic resistance gene commonly found on conjugative plasmids. Specifically, we determined the adaptive landscape of this gene for a small set of mutationally connected genotypes in 3 enteric species. We uncovered that the landscape topographies were largely aligned with minimal host-dependent mutational effects. By simulating gene evolution over the experimentally gauged landscapes, we found that the adaptive evolution of the mobile gene in one species translated to adaptation in another. By simulating gene evolution over artificial landscapes, we found that sufficient alignment between landscapes ensures such "adaptive equivalency" across species. Thus, given adequate landscape alignment within a bacterial community, vehicles of HGT such as plasmids may enable a distributed form of genetic evolution across community members, where species can "crowdsource" adaptation.

Indexed as

Anti-Bacterial AgentsEvolution, MolecularGene Transfer, HorizontalGenomicsGenotypeAnti-Bacterial Agentsadaptive landscapebeta-lactamaseEnterobacteriaceaeepistasisgenomic backgroundhorizontal gene transferprotein evolution

Identifiers

PMID37931146
PMCPMC10657783

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.